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'''Index''' <<TableOfContents>> |
'''Index''' <<TableOfContents>> |
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|| Subject Name || || || || Hemisphere || r(right) or l(left) brain hemisphere || || |
||Subject Name || || || ||Hemisphere ||r(right) or l(left) brain hemisphere || || |
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|| none || |
||none || |
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|| -q || Omit self-intersection and only generate gray/white surface || || || -c || Create curvature and area files from white matter surface || || || -a <avgs> || Average curvature values <avgs> times (default=10) || || || -whiteonly || Only generate white matter surface || || || -orig_white <surf> || specify a white surface to start with || || || -orig_pial <surf> || specify a white surface to start with || || || -w <value> || unknown || || |
||-q ||Omit self-intersection and only generate gray/white surface || || ||-c ||Create curvature and area files from white matter surface || || ||-a <avgs> ||Average curvature values <avgs> times (default=10) || || ||-whiteonly ||Only generate white matter surface || || ||-orig_white <surf> ||specify a white surface to start with || || ||-orig_pial <surf> ||specify a white surface to start with || || ||-w <value> ||unknown || || ||-cover_seg||generate a ?h.white surface from a specified segmentation (also for<<BR>>pial, but it doesn't work well because of the inability to resolve<<BR>>deep narrow sulci).|| || |
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|| ?? || description || || ?? || description || |
||?? ||description || ||?? ||description || |
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Command: | Command: |
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[[References/Lastname###]] | [[References/Lastname##|References/Lastname###]] |
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Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> | Report bugs to < analysis-bugs@nmr.mgh.harvard.edu > |
Index
Contents
Name
mris_make_surfaces - Generates surface files for cortical and white matter surfaces, curvature file for cortical thickness and surface file estimate for layer IV of cortical sheet
Synopsis
mris_make_surfaces [options] <subject name> <hemisphere>
Arguments
Positional Arguments
Subject Name |
|
|
Hemisphere |
r(right) or l(left) brain hemisphere |
|
Required Flagged Arguments
none |
Optional Flagged Arguments
-q |
Omit self-intersection and only generate gray/white surface |
|
-c |
Create curvature and area files from white matter surface |
|
-a <avgs> |
Average curvature values <avgs> times (default=10) |
|
-whiteonly |
Only generate white matter surface |
|
-orig_white <surf> |
specify a white surface to start with |
|
-orig_pial <surf> |
specify a white surface to start with |
|
-w <value> |
unknown |
|
-cover_seg |
generate a ?h.white surface from a specified segmentation (also for |
|
Outputs
?? |
description |
?? |
description |
Description
This program positions the tessellation of the cortical surface at the white matter surface, then the gray matter surface and generate surface files for these surfaces as well as a 'curvature' file for the cortical thickness, and a surface file which approximates layer IV of the cortical sheet.
Examples
Example 1
Command:
Description:
Example 2
Command:
Description:
Bugs
None
See Also
Links
Methods Description
N/A
References
Reporting Bugs
Report bugs to < analysis-bugs@nmr.mgh.harvard.edu >