Index

Name

tkmedit-sess - viewing functional results on the anatomical volume

Synopsis

tkmedit-sess -volid FSVolId -analysis <analysisname> [OPTIONS]

Arguments

Positional Arguments

None

Required Flagged Arguments

-volid FSVolId

name of volume under subject/mri

-analysis analysisname

name of session-level functional analysis

Optional Flagged Arguments

-s

sessid (only one allowed)

-isxavg

method (fixed or random)

-contrast contrastname

contrast name

-map

mapname <sig>, minsig, iminsig, t

-mapanalysis analysisname

name of session-level functional analysis

-mapsess

sessid from which to get the map

-mapisxavg

method

-space spacename

native or tal

-d

sessdir ...

-sessanat

use session 3d anatomical instead of recon

-fsd dir

functional subdirectory (bold)

-asd dir

anatomical subdirectory (3danat)

-seg segvol segcolor

segment vol and color

-aseg

show automatic segmentation (must already exist)

-segopacity opacity

between 0 and 1 (def .3)

-scriptonly

don't run, just generate a script

-umask umask

set unix file permission mask

-version

print version and exit

-fthresh thresh

minimum threshold for display (2)

-fsat thresh

saturation threshold for display

-static

use statically linked version

Outputs

<??> ???

Description

This command is used to view functional results on an anatomical volume. TkMedit is started by one of three methods: launching it from FreeSurfer with the EditVol button, using the tkmedit-sess script, and calling it from the command line.

Examples

Example 1

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Bugs

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See Also

othercommand1

Links

FreeSurfer, FsFast

Methods Description

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References

References/Lastname###

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Author/s

DougGreve