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Index
Contents
Name
tkregister-sess - viewing the registration of images
Synopsis
tkregister-sess
Arguments
Positional Arguments
None
Required Flagged Arguments
None
Optional Flagged Arguments
-sf sessidfile |
... |
-df srchdirfile |
... |
-s sessid |
... |
-d srchdir |
... |
-surf surfacename |
display surfacename as an overlay (white) |
-nosurf |
don't display a surface |
-rsd dir |
subdirectory with data to register () |
-fsd dir |
functional subdirectory (bold) |
-asd dir |
anatomical subdirectory (3danat) |
-nocopy |
do not copy registration to fsd |
-sessanat |
register to same-session anatomical |
-anatvol dir |
specify subdirectory of subjid/mri |
-volview volid |
starup with either <targ> or mov |
-fov FOV |
set window FOV in mm (default is 256) |
-movscale scale |
scale size of move |
-plane orient |
starup with orient. <cor>, sag, or ax |
-slice sliceno |
starup with slice. Default is 128 |
-regfile file |
use file instead of register.dat |
-umask umask |
set unix file permission mask |
-version |
print version and exit |
-useold |
use tkregister instead of tkregister2 |
Outputs
<??> ??
Description
Because of movement and EPI distortion, the automatic stage can only get the registration close. Manual registration is used to check and fine-tune the automatic registration, or to perform the entire registration in the case that there are no same-session anatomicals or if the automatic registration failed. Even if the automatic registration succeeded, always check the registration manually.
Examples
Example 1
tkregister-sess sf sessid df sesspar
This will read the register.dat created by the automatic registration and bring up two windows, one with a brain, the other a control window.
Bugs
???
See Also
Links
Methods Description
???
References
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>