preproc-sess sess01 $Id: preproc-sess,v 1.64 2015/12/10 22:51:30 zkaufman Exp $ Linux transfer 2.6.32-573.18.1.el6.x86_64 #1 SMP Tue Feb 9 22:46:17 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux Wed Apr 27 14:20:57 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -s sess01 -fsd bold -stc up -surface fsaverage lhrh -mni305 -fwhm 5 -per-run ProjectDir /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional sess01 Template ----------------------------- mktemplate-sess -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -fsd bold -update Session: /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01 ---------------- Wed Apr 27 14:20:57 EDT 2016 Detected input format at nii.gz sess01 Update not needed Run: 001 ---------------- Wed Apr 27 14:20:57 EDT 2016 sess01 001 Update not needed Run: 002 ---------------- Wed Apr 27 14:20:57 EDT 2016 sess01 002 Update not needed Run: 003 ---------------- Wed Apr 27 14:20:57 EDT 2016 sess01 003 Update not needed Run: 004 ---------------- Wed Apr 27 14:20:57 EDT 2016 sess01 004 Update not needed Wed Apr 27 14:20:57 EDT 2016 mktemplate-sess completed sess01 Registration ----------------------------- register-sess -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -fsd bold -delete-dat -dof 6 -bold -per-run -update -init-coreg -------------------------------------------------------------- register-sess logfile is /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/log/register-sess.sess01.log -------------------------------------------------------------- Wed Apr 27 14:20:57 EDT 2016 setenv SUBJECTS_DIR /cluster/pubftp/data/tutorial_data/fsfast-tutorial.subjects cd /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional /usr/local/freesurfer/dev/fsfast/bin/register-sess -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -fsd bold -delete-dat -dof 6 -bold -per-run -update -init-coreg freesurfer-Linux-centos6_x86_64-dev-20160415 Linux transfer 2.6.32-573.18.1.el6.x86_64 #1 SMP Tue Feb 9 22:46:17 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux Session: /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01 ---------------- Wed Apr 27 14:20:57 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01 Run: 001 ---------------- Wed Apr 27 14:20:57 EDT 2016 Update not needed Run: 002 ---------------- Wed Apr 27 14:20:57 EDT 2016 Update not needed Run: 003 ---------------- Wed Apr 27 14:20:57 EDT 2016 Update not needed Run: 004 ---------------- Wed Apr 27 14:20:57 EDT 2016 Update not needed Wed Apr 27 14:20:57 EDT 2016 register-sess completed sess01 Mask ------------------------ mkbrainmask-sess -maskstem brain -fsd bold -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -per-run -update ------------------------------------------------ /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01 Wed Apr 27 14:20:57 EDT 2016 sess01 Update not needed for session-level mask sess01 Update not needed for run 001 mask sess01 Update not needed for run 002 mask sess01 Update not needed for run 003 mask sess01 Update not needed for run 004 mask sess01 Update not needed for run 001 meanval sess01 Update not needed for run 002 meanval sess01 Update not needed for run 003 meanval sess01 Update not needed for run 004 meanval Wed Apr 27 14:20:57 EDT 2016 mkbrainmask-sess done sess01 MC ----------------------------- mc-sess -fstem f -fmcstem fmcpr -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -fsd bold -per-run -update Logfile is /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/log/mc-sess01-bold.log ------------------------------------------- /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01 RunList: 001 002 003 004 sess01 001 Update not needed sess01 002 Update not needed sess01 003 Update not needed sess01 004 Update not needed Wed Apr 27 14:20:57 EDT 2016 mc-sess completed SUCCESSFULLY sess01 STC ----------------------------- stc-sess -i fmcpr -o fmcpr.up -ngroups 1 -so up -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -fsd bold -update Wed Apr 27 14:20:57 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional /usr/local/freesurfer/dev/fsfast/bin/stc-sess -i fmcpr -o fmcpr.up -ngroups 1 -so up -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -fsd bold -update $Id: stc-sess,v 1.13 2015/12/10 22:51:31 zkaufman Exp $ transfer sess01 ----------------- Wed Apr 27 14:20:57 EDT 2016 -rw-rw-r-- 1 zkaufman fsdev 62635864 Mar 27 21:55 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/001/fmcpr.up.nii.gz -rw-rw-r-- 1 zkaufman fsdev 61970438 Mar 27 21:53 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/001/fmcpr.nii.gz Update not needed -rw-rw-r-- 1 zkaufman fsdev 62605836 Mar 27 21:55 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/002/fmcpr.up.nii.gz -rw-rw-r-- 1 zkaufman fsdev 61849924 Mar 27 21:54 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/002/fmcpr.nii.gz Update not needed -rw-rw-r-- 1 zkaufman fsdev 62591453 Mar 27 21:56 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/fmcpr.up.nii.gz -rw-rw-r-- 1 zkaufman fsdev 61849878 Mar 27 21:54 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/fmcpr.nii.gz Update not needed -rw-rw-r-- 1 zkaufman fsdev 62604299 Mar 27 21:56 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/fmcpr.up.nii.gz -rw-rw-r-- 1 zkaufman fsdev 61838735 Mar 27 21:55 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/fmcpr.nii.gz Update not needed Started at Wed Apr 27 14:20:57 EDT 2016 Ended at Wed Apr 27 14:20:58 EDT 2016 stc-sess Done sess01 To Surface ----------------------------- rawfunc2surf-sess -fwhm 5 -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -fsd bold -trgsubject fsaverage -stc up -update -per-run instem fmcpr.up outstem fmcpr.up.sm5.fsaverage.hemi ------------------------------ 1/1 sess01 1/1 sess01 001 lh --------- Wed Apr 27 14:20:58 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/001/masks/brain.fsaverage.lh.pr.nii.gz does not need updating 1/1 sess01 002 lh --------- Wed Apr 27 14:20:58 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/002/masks/brain.fsaverage.lh.pr.nii.gz does not need updating 1/1 sess01 003 lh --------- Wed Apr 27 14:20:58 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/masks/brain.fsaverage.lh.pr.nii.gz does not need updating 1/1 sess01 004 lh --------- Wed Apr 27 14:20:58 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/masks/brain.fsaverage.lh.pr.nii.gz does not need updating /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/masks/brain.fsaverage.lh.pr.nii.gz does not need updating 1/1 sess01 001 rh --------- Wed Apr 27 14:20:58 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/001/masks/brain.fsaverage.rh.pr.nii.gz does not need updating 1/1 sess01 002 rh --------- Wed Apr 27 14:20:58 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/002/masks/brain.fsaverage.rh.pr.nii.gz does not need updating 1/1 sess01 003 rh --------- Wed Apr 27 14:20:58 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/masks/brain.fsaverage.rh.pr.nii.gz does not need updating 1/1 sess01 004 rh --------- Wed Apr 27 14:20:58 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/masks/brain.fsaverage.rh.pr.nii.gz does not need updating /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/masks/brain.fsaverage.rh.pr.nii.gz does not need updating 1/1 sess01 001 lh --------- Wed Apr 27 14:20:58 EDT 2016 sess01 001 Update not needed 1/1 sess01 002 lh --------- Wed Apr 27 14:20:58 EDT 2016 sess01 002 Update not needed 1/1 sess01 003 lh --------- Wed Apr 27 14:20:58 EDT 2016 sess01 003 Update not needed 1/1 sess01 004 lh --------- Wed Apr 27 14:20:58 EDT 2016 sess01 004 Update not needed 1/1 sess01 001 rh --------- Wed Apr 27 14:20:58 EDT 2016 sess01 001 Update not needed 1/1 sess01 002 rh --------- Wed Apr 27 14:20:58 EDT 2016 sess01 002 Update not needed 1/1 sess01 003 rh --------- Wed Apr 27 14:20:58 EDT 2016 sess01 003 Update not needed 1/1 sess01 004 rh --------- Wed Apr 27 14:20:58 EDT 2016 sess01 004 Update not needed Wed Apr 27 14:20:58 EDT 2016 rawfunc2surf-sess completed sess01 To MNI305 ----------------------------- rawfunc2tal-sess -fwhm 5 -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -fsd bold -stc up -update -subcort-mask -per-run ------------------------------ 1/1 sess01 fsf01anat 1/1 sess01 001 ---------------- Wed Apr 27 14:20:58 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/001/masks/brain.mni305.2mm.pr.nii.gz does not need updating 1/1 sess01 002 ---------------- Wed Apr 27 14:20:58 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/002/masks/brain.mni305.2mm.pr.nii.gz does not need updating 1/1 sess01 003 ---------------- Wed Apr 27 14:20:58 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/masks/brain.mni305.2mm.pr.nii.gz does not need updating 1/1 sess01 004 ---------------- Wed Apr 27 14:20:58 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/masks/brain.mni305.2mm.pr.nii.gz does not need updating /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/masks/brain.mni305.2mm.nii.gz does not need updating 1/1 sess01 001 ---------------- Wed Apr 27 14:20:58 EDT 2016 sess01 001 Update not needed 1/1 sess01 002 ---------------- Wed Apr 27 14:20:58 EDT 2016 sess01 002 Update not needed 1/1 sess01 003 ---------------- Wed Apr 27 14:20:58 EDT 2016 sess01 003 Update not needed 1/1 sess01 004 ---------------- Wed Apr 27 14:20:59 EDT 2016 sess01 004 Update not needed Wed Apr 27 14:20:59 EDT 2016 rawfunc2tal-sess completed ---------------------------------------- Started at Wed Apr 27 14:20:57 EDT 2016 Ended at Wed Apr 27 14:20:59 EDT 2016