Fri Nov 13 11:35:23 EST 2015 /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi /autofs/space/tanha_002/users/greve/fsdev.build/bin/recon-all -sb fsaverage/xhemi -talairach subjid fsaverage/xhemi setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects FREESURFER_HOME /autofs/space/tanha_002/users/greve/fsdev.build Actual FREESURFER_HOME /autofs/space/tanha_002/users/greve/fsdev.build build-stamp.txt: freesurfer-x86_64-unknown-linux-gnu-dev5-20151109 Linux compute-0-26 2.6.32-573.7.1.el6.x86_64 #1 SMP Tue Sep 22 22:00:00 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 128305 total used free shared buffers cached Mem: 32877252 16407600 16469652 4 6016 14493352 -/+ buffers/cache: 1908232 30969020 Swap: 67108860 88844 67020016 pbsjob 10465732.launchpad.nmr.mgh.harvard.edu ######################################## program versions used $Id: recon-all,v 1.552 2015/11/06 19:32:20 ltirrell Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:23-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_convert.c,v 1.225 2015/10/19 18:48:26 fischl Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: talairach_avi,v 1.11 2015/01/13 20:22:51 nicks Exp $ mri_convert --version dev build (use --all-info flag for full version info) ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:24-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: tkregister2.c,v 1.129 2014/02/26 21:31:58 greve Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:25-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:25-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_normalize.c,v 1.85 2015/08/05 19:24:14 fischl Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:25-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_watershed.cpp,v 1.101 2015/07/10 18:57:33 greve Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:25-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:25-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_segment.c,v 1.43 2015/02/05 23:34:40 zkaufman Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:25-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_label2label.c,v 1.47 2014/12/22 19:59:18 greve Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:26-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_em_register.c,v 1.103 2015/08/26 16:51:09 fischl Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:26-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_ca_normalize.c,v 1.65 2015/10/10 17:28:19 fischl Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:26-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_ca_register.c,v 1.93 2015/06/24 16:03:22 fischl Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:26-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_ca_label.c,v 1.109 2015/08/26 16:46:38 fischl Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:26-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_pretess.c,v 1.22 2013/08/30 18:12:25 mreuter Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:27-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:27-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_tessellate.c,v 1.38 2014/03/22 00:41:04 greve Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:27-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_concatenate_lta.c,v 1.15 2015/08/19 16:35:05 greve Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:27-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:27-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:27-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mris_inflate.c,v 1.44 2012/01/05 18:36:17 greve Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:28-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:28-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mris_sphere.c,v 1.59 2014/11/06 01:38:58 nicks Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:28-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:28-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:28-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:29-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:29-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mris_make_surfaces.c,v 1.161 2015/11/06 16:00:27 fischl Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:29-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mris_register.c,v 1.61 2013/01/15 17:19:03 greve Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:29-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mris_volmask.cpp,v 1.26 2014/11/06 03:40:22 nicks Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:29-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mris_anatomical_stats.c,v 1.78 2015/07/06 21:58:51 greve Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:29-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:30-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:30-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mris_calc.c,v 1.53 2015/06/04 20:50:50 nicks Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_register.cpp,v 1.76 2015/09/22 19:55:12 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:30-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_robust_register.cpp,v 1.76 2015/09/22 19:55:12 mreuter Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_template.cpp,v 1.51 2015/09/22 20:57:47 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:30-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_robust_template.cpp,v 1.51 2015/09/22 20:57:47 mreuter Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:31-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:31-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:31-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:32-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_segstats.c,v 1.119 2015/10/06 18:46:12 greve Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2015/11/13-16:35:32-GMT BuildTimeStamp: Nov 9 2015 14:23:32 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: greve Machine: compute-0-26 Platform: Linux PlatformVersion: 2.6.32-573.7.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ####################################### GCADIR /autofs/space/tanha_002/users/greve/fsdev.build/average GCA RB_all_2015-08-04.gca GCASkull RB_all_withskull_2014-08-21.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /autofs/space/tanha_002/users/greve/fsdev.build/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### #-------------------------------------------- #@# Talairach Fri Nov 13 11:35:32 EST 2015 /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 200 --stop 1e-4 --shrink 2 /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri /autofs/space/tanha_002/users/greve/fsdev.build/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 200 --stop 1e-4 --shrink 2 nIters 1 $Id: mri_nu_correct.mni,v 1.23 2015/06/18 00:21:28 nicks Exp $ Linux compute-0-26 2.6.32-573.7.1.el6.x86_64 #1 SMP Tue Sep 22 22:00:00 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux Fri Nov 13 11:35:32 EST 2015 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 tmpdir is ./tmp.mri_nu_correct.mni.2535 /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.2535/nu0.mnc -odt float mri_convert orig.mgz ./tmp.mri_nu_correct.mni.2535/nu0.mnc -odt float $Id: mri_convert.c,v 1.225 2015/10/19 18:48:26 fischl Exp $ reading from orig.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.2535/nu0.mnc... -------------------------------------------------------- Iteration 1 Fri Nov 13 11:35:36 EST 2015 nu_correct -clobber ./tmp.mri_nu_correct.mni.2535/nu0.mnc ./tmp.mri_nu_correct.mni.2535/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.2535/0/ -iterations 1000 -stop 1e-4 -distance 200 -shrink 2 [greve@compute-0-26:/autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/] [2015-11-13 11:35:37] running: /usr/pubsw/packages/mni/current/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 1e-4 -shrink 2 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.2535/0/ ./tmp.mri_nu_correct.mni.2535/nu0.mnc ./tmp.mri_nu_correct.mni.2535/nu1.imp 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Processing:.................................................................................................................................Done Processing:.................................................................................................................................Done Processing:.................................................................................................................................Done Processing:.................................................................................................................................Done Processing:.................................................................................................................................Done Processing:.................................................................................................................................Done Processing:.................................................................................................................................Done Processing:.................................................................................................................................Done Processing:.................................................................................................................................Done Processing:.................................................................................................................................Done Processing:.................................................................................................................................Done Processing:.................................................................................................................................Done Number of iterations: 132 CV of field change: 9.95676e-05 mri_convert ./tmp.mri_nu_correct.mni.2535/nu1.mnc orig_nu.mgz --like orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.2535/nu1.mnc orig_nu.mgz --like orig.mgz --conform $Id: mri_convert.c,v 1.225 2015/10/19 18:48:26 fischl Exp $ reading from ./tmp.mri_nu_correct.mni.2535/nu1.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram writing to orig_nu.mgz... Fri Nov 13 11:47:07 EST 2015 mri_nu_correct.mni done talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... cp transforms/talairach.auto.xfm transforms/talairach.xfm #------------------------------------------ Started at Fri Nov 13 11:35:23 EST 2015 Ended at Fri Nov 13 11:48:23 EST 2015 #@#%# recon-all-run-time-hours 0.217 recon-all -s fsaverage/xhemi finished without error at Fri Nov 13 11:48:23 EST 2015