isxconcat-sess log file $Id: isxconcat-sess,v 1.72 2015/12/10 22:51:30 zkaufman Exp $ Sun Sep 30 20:17:51 EDT 2018 Linux topaz.nmr.mgh.harvard.edu 3.10.0-693.11.1.el7.x86_64 #1 SMP Mon Dec 4 23:52:40 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional /autofs/space/topaz_001/users/ah221/test/freesurfer/fsfast/bin/isxconcat-sess -sf sessidlist -analysis workmem.sm05.lh -contrast encode-v-base -o group uid=3935749(ah221) gid=3935749(ah221) groups=3935749(ah221),160(fsdev),1013(p41),1046(recon),1071(birn),1538(lcnweb),1587(fhs),1590(fsbuild),1598(pmb),1601(b40atlas),1658(fcd),1664(exc),1710(histo),1725(alsgp) GetHRF = 0 cd /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional isxconcat0-sess -sf sessidlist -m mask -o group/workmem.sm05.lh/masks.nii.gz -a workmem.sm05.lh ------------------------------------ /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional mri_concat /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess01/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess02/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess03/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess04/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess05/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess06/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess07/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess08/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess09/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess10/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess11/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess12/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess13/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess14/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess15/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess16/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess17/bold/workmem.sm05.lh//mask.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess18/bold/workmem.sm05.lh//mask.nii.gz --o group/workmem.sm05.lh/masks.nii.gz ninputs = 18 Checking inputs nframestot = 18 Allocing output Done allocing nframes = 18 Writing to group/workmem.sm05.lh/masks.nii.gz Started at Sun Sep 30 20:17:52 EDT 2018 Ended at Sun Sep 30 20:17:52 EDT 2018 isxconcat0-sess completed mri_binarize --i group/workmem.sm05.lh/masks.nii.gz --frame-and --o group/workmem.sm05.lh/mask.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional cmdline mri_binarize.bin --i group/workmem.sm05.lh/masks.nii.gz --frame-and --o group/workmem.sm05.lh/mask.nii.gz sysname Linux hostname topaz.nmr.mgh.harvard.edu machine x86_64 user ah221 input group/workmem.sm05.lh/masks.nii.gz frame 0 nErode3d 0 nErode2d 0 output group/workmem.sm05.lh/mask.nii.gz Binarizing based on threshold min 0 max +infinity binval 1 binvalnot 0 Summing over 18 frames fstart = 0, fend = 0, nframes = 1 Found 149925 values in range Counting number of voxels in first frame Found 149925 voxels in final mask Count: 149925 149925.000000 163842 91.505841 mri_binarize done encode-v-base J = 1 cd /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional isxconcat0-sess -m ces -o group/workmem.sm05.lh/encode-v-base/ces.nii.gz -sf sessidlist -c encode-v-base -a workmem.sm05.lh -split ------------------------------------ /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional mri_concat /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess01/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess02/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess03/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess04/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess05/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess06/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess07/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess08/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess09/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess10/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess11/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess12/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess13/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess14/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess15/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess16/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess17/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess18/bold/workmem.sm05.lh/encode-v-base/ces.nii.gz --o group/workmem.sm05.lh/encode-v-base/ces.nii.gz ninputs = 18 Checking inputs nframestot = 18 Allocing output Done allocing nframes = 18 Writing to group/workmem.sm05.lh/encode-v-base/ces.nii.gz Started at Sun Sep 30 20:17:53 EDT 2018 Ended at Sun Sep 30 20:17:54 EDT 2018 isxconcat0-sess completed cd /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional isxconcat0-sess -m cesvar -o group/workmem.sm05.lh/encode-v-base/cesvar.nii.gz -sf sessidlist -c encode-v-base -a workmem.sm05.lh -split ------------------------------------ /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional mri_concat /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess01/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess02/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess03/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess04/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess05/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess06/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess07/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess08/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess09/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess10/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess11/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess12/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess13/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess14/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess15/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess16/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess17/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess18/bold/workmem.sm05.lh/encode-v-base/cesvar.nii.gz --o group/workmem.sm05.lh/encode-v-base/cesvar.nii.gz ninputs = 18 Checking inputs nframestot = 18 Allocing output Done allocing nframes = 18 Writing to group/workmem.sm05.lh/encode-v-base/cesvar.nii.gz Started at Sun Sep 30 20:17:54 EDT 2018 Ended at Sun Sep 30 20:17:55 EDT 2018 isxconcat0-sess completed cd /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional isxconcat0-sess -m meanfunc -o group/workmem.sm05.lh/meanfunc.nii.gz -sf sessidlist -a workmem.sm05.lh ------------------------------------ /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional mri_concat /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess01/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess02/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess03/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess04/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess05/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess06/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess07/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess08/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess09/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess10/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess11/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess12/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess13/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess14/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess15/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess16/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess17/bold/workmem.sm05.lh//meanfunc.nii.gz /autofs/cluster/freesurfer/tutorials/tutorial_data/fsfast-functional/sess18/bold/workmem.sm05.lh//meanfunc.nii.gz --o group/workmem.sm05.lh/meanfunc.nii.gz ninputs = 18 Checking inputs nframestot = 18 Allocing output