FSL WITH OTHER SOFTWARE
FSL Plugins Wiki
On the FSL
Plugins Wiki we provide a list of plugins, extensions, toolboxes,
templates and atlases that have been created by other groups and are
relevant to users of FSL.
FreeSurfer - Cortical flattening and modelling
FreeSurfer is a
set of tools for reconstruction/flattening of the brain's cortical
surface and subcortical segmentation/registration, produced at MGH,
Boston. It can, for example, be used to overlay functional data onto
the inflated/flattened cortical surface, or carry out multi-subject
FMRI statistics on the cortical surface. We have worked together with
MGH to make interoperation of FSL and FreeSurfer as easy as possible.
NITRC - Neuroimaging software resource
FSL is just one of many software packages listed at the
NITRC neuroimaging tools
resource. The site also includes a
recently-started list
of third-party FSL extensions.