NAME
mris_apply_reg
SYNOPSIS
mris_apply_reg [options] <in volume> <out volume>
DESCRIPTION
mris_apply_reg applys surface registration.
REQUIRED-FLAGGED ARGUMENTS
None
| Argument | Explanation |
|---|
| --src srcvalfile | Input file that supplies the source values to convert |
OPTIONAL-FLAGGED ARGUMENTS
CONVERTING TO SPM-ANALYZE FORMAT
Converting to SPM-Analyze format can be done in two ways, depending upon whether a single frame or multiple frames are desired. For a single frame, simply specify the output file name with a .img extension, and mri_convert will save the first frame into the file. For multiple frames, specify the base as the output file name and add --out_type spm. This will save each frame as baseXXX.img where XXX is the three-digit, zero-padded frame number. Frame numbers begin at one. By default, the width the of zero padding is 3. This can be controlled with --in_nspmzeropad N where N is the new width.
| Argument | Explanation |
|---|
| --ascii | save output as ascii. This will be a data file with a single column of data. The fastest dimension will be col, then row,then slice, then frame. |
OUTPUTS
| Output | Explanation |
|---|
| outvolume | output volume |
EXAMPLE 1
APPLYING TRANSFORMS (INCLUDING TALAIRACH)
The volume can
BUGS
None
REPORTING
Report bugs to <freesurfer@nmr.mgh.harvard.edu>
SEE-ALSO
mris_convert