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# Title Segmentation Statistics # |
# Title Segmentation Statistics # |
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# cmdline mri_segstats --seg /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz --ctab /Users/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.nii --sum fa.stats # sysname Darwin # hostname breck |
# cmdline mri_segstats --seg /home/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.m gz --ctab /home/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa. nii --sum fa.stats # sysname Linux # hostname nmrclass29 |
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# # SegVolFile /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz # SegVolFileTimeStamp 2016/09/27 17:35:42 # ColorTable /Users/nmrclass/freesurfer/FreeSurferColorLUT.txt # ColorTableTimeStamp 2016/03/23 03:23:09 # InVolFile fa.nii # InVolFileTimeStamp 2015/04/08 14:42:49 # InVolFrame 0 |
# # SegVolFile /home/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz # SegVolFileTimeStamp 2017/02/14 13:45:12 # ColorTable /home/nmrclass/freesurfer/FreeSurferColorLUT.txt # ColorTableTimeStamp 2016/03/15 12:26:09 # InVolFile fa.nii # InVolFileTimeStamp 2017/02/14 11:11:11 # InVolFrame 0 |
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# VoxelVolume_mm3 8 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId |
# VoxelVolume_mm3 8 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId |
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# TableCol 3 ColHeader NVoxels | # TableCol 3 ColHeader NVoxels |
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# TableCol 6 ColHeader Mean | # TableCol 6 ColHeader Mean |
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# NRows 6 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range 1 251 114 912.0 CC_Posterior 0.6130 0.2308 0.0946 1.0749 0.9803 2 3021 347 2776.0 wm-lh-pericalcarine 0.2702 0.1309 0.0181 0.7177 0.6996 3 3024 1840 14720.0 wm-lh-precentral 0.3853 0.1491 0.0285 0.9488 0.9203 4 3030 1054 8432.0 wm-lh-superiortemporal 0.4126 0.1256 0.0213 1.1030 1.0817 5 12 622 4976.0 Left-Putamen 0.2535 0.1183 0.0469 0.6283 0.5814 6 4 992 7936.0 Left-Lateral-Ventricle 0.1229 0.1394 0.0108 1.1163 1.1055 |
# NRows 6 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range 1 251 183 1464.0 CC_Posterior 0.5944 0.2361 0.0946 1.0749 0.9803 2 3021 374 2992.0 wm-lh-pericalcarine 0.2584 0.1336 0.0181 0.7177 0.6996 3 3024 1912 15296.0 wm-lh-precentral 0.3808 0.1504 0.0250 0.9488 0.9238 4 3030 1043 8344.0 wm-lh-superiortemporal 0.4084 0.1292 0.0213 1.1030 1.0817 5 12 573 4584.0 Left-Putamen 0.2414 0.1149 0.0469 0.6832 0.6362 6 4 1052 8416.0 Left-Lateral-Ventricle 0.1197 0.1281 0.0108 1.0803 1.0695 |
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Contents of $TUTORIAL_DATA/diffusion_tutorial/Diff001/dtrecon/fa.stats
# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.120 2016/03/02 22:30:05 greve Exp $ # cmdline mri_segstats --seg /home/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.m gz --ctab /home/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa. nii --sum fa.stats # sysname Linux # hostname nmrclass29 # machine x86_64 # user nmrclass # anatomy_type volume # # SegVolFile /home/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz # SegVolFileTimeStamp 2017/02/14 13:45:12 # ColorTable /home/nmrclass/freesurfer/FreeSurferColorLUT.txt # ColorTableTimeStamp 2016/03/15 12:26:09 # InVolFile fa.nii # InVolFileTimeStamp 2017/02/14 11:11:11 # InVolFrame 0 # Only reporting non-empty segmentations # VoxelVolume_mm3 8 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader Mean # TableCol 6 FieldName Intensity Mean # TableCol 6 Units unknown # TableCol 7 ColHeader StdDev # TableCol 7 FieldName Itensity StdDev # TableCol 7 Units unknown # TableCol 8 ColHeader Min # TableCol 8 FieldName Intensity Min # TableCol 8 Units unknown # TableCol 9 ColHeader Max # TableCol 9 FieldName Intensity Max # TableCol 9 Units unknown # TableCol 10 ColHeader Range # TableCol 10 FieldName Intensity Range # TableCol 10 Units unknown # NRows 6 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range 1 251 183 1464.0 CC_Posterior 0.5944 0.2361 0.0946 1.0749 0.9803 2 3021 374 2992.0 wm-lh-pericalcarine 0.2584 0.1336 0.0181 0.7177 0.6996 3 3024 1912 15296.0 wm-lh-precentral 0.3808 0.1504 0.0250 0.9488 0.9238 4 3030 1043 8344.0 wm-lh-superiortemporal 0.4084 0.1292 0.0213 1.1030 1.0817 5 12 573 4584.0 Left-Putamen 0.2414 0.1149 0.0469 0.6832 0.6362 6 4 1052 8416.0 Left-Lateral-Ventricle 0.1197 0.1281 0.0108 1.0803 1.0695