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# Title Segmentation Statistics # |
# Title Segmentation Statistics # |
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# cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ # cmdline mri_segstats --seg /mnt/macmini/RW_tutorial_data/qdec/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz --ctab /mnt/macmini/apps/centos4_x86_64/freesurfer/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i ces.anat.bb.mgh --sum ces.pos-masked.bb.stats --mask sig.anat.bb.mgh --maskthresh 2 --masksign pos |
# cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ # cmdline mri_segstats --seg /home/nmrclass/tutorial_data/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz --ctab /home/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i ces.anat.bb.mgh --sum ces.pos-masked.bb.stats --mask sig.anat.bb.mgh --maskthresh 2 --masksign pos |
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# # SegVolFile /mnt/macmini/RW_tutorial_data/qdec/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz # SegVolFileTimeStamp 2011/12/19 13:53:31 # ColorTable /mnt/macmini/apps/centos4_x86_64/freesurfer/FreeSurferColorLUT.txt # ColorTableTimeStamp 2013/05/13 20:31:02 # MaskVolFile sig.anat.bb.mgh # MaskVolFileTimeStamp 2014/10/22 17:34:54 # MaskThresh 2.000000 # MaskSign pos # MaskFrame 0 # MaskInvert 0 # InVolFile ces.anat.bb.mgh # InVolFileTimeStamp 2014/10/22 17:24:29 # InVolFrame 0 |
# # SegVolFile /home/nmrclass/tutorial_data/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz # SegVolFileTimeStamp 2017/02/08 11:13:38 # ColorTable /home/nmrclass/freesurfer/FreeSurferColorLUT.txt # ColorTableTimeStamp 2017/01/18 17:00:02 # MaskVolFile sig.anat.bb.mgh # MaskVolFileTimeStamp 2017/02/10 22:56:48 # MaskThresh 2.000000 # MaskSign pos # MaskFrame 0 # MaskInvert 0 # InVolFile ces.anat.bb.mgh # InVolFileTimeStamp 2017/02/10 22:38:30 # InVolFrame 0 |
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# VoxelVolume_mm3 1 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId |
# VoxelVolume_mm3 1 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId |
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| # TableCol 3 ColHeader NVoxels | # TableCol 3 ColHeader NVoxels |
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| # TableCol 6 ColHeader Mean | # TableCol 6 ColHeader Mean |
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# NRows 4 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range 1 1021 1408 1408.0 ctx-lh-pericalcarine 198.1904 150.7542 32.1526 713.9155 681.7629 2 1022 4078 4078.0 ctx-lh-postcentral 105.7220 71.3426 19.5321 461.8479 442.3158 3 1030 4384 4384.0 ctx-lh-superiortemporal 107.2234 84.5133 25.4251 461.8479 436.4228 4 17 57 57.0 Left-Hippocampus 77.5613 28.2381 43.2457 116.7186 73.4729 |
# NRows 4 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range 1 1021 1424 1424.0 ctx-lh-pericalcarine 198.5072 155.1710 32.1526 713.9155 681.7629 2 1022 4339 4339.0 ctx-lh-postcentral 107.5108 72.4555 19.5321 461.8479 442.3158 3 1030 4283 4283.0 ctx-lh-superiortemporal 111.8215 88.4794 25.4251 461.8479 436.4228 4 17 79 79.0 Left-Hippocampus 75.6666 28.8688 43.2457 131.5358 88.2900 |
ces.bb.stats
# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ # cmdline mri_segstats --seg /home/nmrclass/tutorial_data/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz --ctab /home/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i ces.anat.bb.mgh --sum ces.bb.stats # sysname Linux # hostname nmrclass # machine x86_64 # user nmrclass # anatomy_type volume # # SegVolFile /home/nmrclass/tutorial_data/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz # SegVolFileTimeStamp 2017/02/08 11:13:38 # ColorTable /home/nmrclass/freesurfer/FreeSurferColorLUT.txt # ColorTableTimeStamp 2017/01/18 17:00:02 # InVolFile ces.anat.bb.mgh # InVolFileTimeStamp 2017/02/10 22:38:30 # InVolFrame 0 # Only reporting non-empty segmentations # VoxelVolume_mm3 1 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader Mean # TableCol 6 FieldName Intensity Mean # TableCol 6 Units unknown # TableCol 7 ColHeader StdDev # TableCol 7 FieldName Itensity StdDev # TableCol 7 Units unknown # TableCol 8 ColHeader Min # TableCol 8 FieldName Intensity Min # TableCol 8 Units unknown # TableCol 9 ColHeader Max # TableCol 9 FieldName Intensity Max # TableCol 9 Units unknown # TableCol 10 ColHeader Range # TableCol 10 FieldName Intensity Range # TableCol 10 Units unknown # NRows 4 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range 1 1021 2752 2752.0 ctx-lh-pericalcarine 106.8231 148.2634 -93.9361 713.9155 807.8517 2 1022 12433 12433.0 ctx-lh-postcentral 27.3889 78.8337 -232.6694 461.8479 694.5173 3 1030 14850 14850.0 ctx-lh-superiortemporal 29.7299 74.3285 -143.5521 461.8479 605.4000 4 17 4534 4534.0 Left-Hippocampus 2.2293 23.3774 -113.9432 131.5358 245.4790
ces.abs-masked.bb.stats
# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ # cmdline mri_segstats --seg /home/nmrclass/tutorial_data/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz --ctab /home/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i ces.anat.bb.mgh --sum ces.abs-masked.bb.stats --mask sig.anat.bb.mgh --maskthresh 2 --masksign abs # sysname Linux # hostname nmrclass # machine x86_64 # user nmrclass # anatomy_type volume # # SegVolFile /home/nmrclass/tutorial_data/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz # SegVolFileTimeStamp 2017/02/08 11:13:38 # ColorTable /home/nmrclass/freesurfer/FreeSurferColorLUT.txt # ColorTableTimeStamp 2017/01/18 17:00:02 # MaskVolFile sig.anat.bb.mgh # MaskVolFileTimeStamp 2017/02/10 22:48:43 # MaskThresh 2.000000 # MaskSign abs # MaskFrame 0 # MaskInvert 0 # InVolFile ces.anat.bb.mgh # InVolFileTimeStamp 2017/02/10 22:38:30 # InVolFrame 0 # Only reporting non-empty segmentations # VoxelVolume_mm3 1 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader Mean # TableCol 6 FieldName Intensity Mean # TableCol 6 Units unknown # TableCol 7 ColHeader StdDev # TableCol 7 FieldName Itensity StdDev # TableCol 7 Units unknown # TableCol 8 ColHeader Min # TableCol 8 FieldName Intensity Min # TableCol 8 Units unknown # TableCol 9 ColHeader Max # TableCol 9 FieldName Intensity Max # TableCol 9 Units unknown # TableCol 10 ColHeader Range # TableCol 10 FieldName Intensity Range # TableCol 10 Units unknown # NRows 4 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range 1 1021 1535 1535.0 ctx-lh-pericalcarine 180.1391 163.3732 -93.9361 713.9155 807.8517 2 1022 5937 5937.0 ctx-lh-postcentral 60.8179 100.6084 -232.6694 461.8479 694.5173 3 1030 5012 5012.0 ctx-lh-superiortemporal 88.2699 100.3035 -143.5521 461.8479 605.4000 4 17 136 136.0 Left-Hippocampus 26.6048 62.5893 -113.9432 131.5358 245.4790
ces.pos-masked.bb.stats
# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ # cmdline mri_segstats --seg /home/nmrclass/tutorial_data/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz --ctab /home/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i ces.anat.bb.mgh --sum ces.pos-masked.bb.stats --mask sig.anat.bb.mgh --maskthresh 2 --masksign pos # sysname Linux # hostname nmrclass # machine x86_64 # user nmrclass # anatomy_type volume # # SegVolFile /home/nmrclass/tutorial_data/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz # SegVolFileTimeStamp 2017/02/08 11:13:38 # ColorTable /home/nmrclass/freesurfer/FreeSurferColorLUT.txt # ColorTableTimeStamp 2017/01/18 17:00:02 # MaskVolFile sig.anat.bb.mgh # MaskVolFileTimeStamp 2017/02/10 22:56:48 # MaskThresh 2.000000 # MaskSign pos # MaskFrame 0 # MaskInvert 0 # InVolFile ces.anat.bb.mgh # InVolFileTimeStamp 2017/02/10 22:38:30 # InVolFrame 0 # Only reporting non-empty segmentations # VoxelVolume_mm3 1 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader Mean # TableCol 6 FieldName Intensity Mean # TableCol 6 Units unknown # TableCol 7 ColHeader StdDev # TableCol 7 FieldName Itensity StdDev # TableCol 7 Units unknown # TableCol 8 ColHeader Min # TableCol 8 FieldName Intensity Min # TableCol 8 Units unknown # TableCol 9 ColHeader Max # TableCol 9 FieldName Intensity Max # TableCol 9 Units unknown # TableCol 10 ColHeader Range # TableCol 10 FieldName Intensity Range # TableCol 10 Units unknown # NRows 4 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range 1 1021 1424 1424.0 ctx-lh-pericalcarine 198.5072 155.1710 32.1526 713.9155 681.7629 2 1022 4339 4339.0 ctx-lh-postcentral 107.5108 72.4555 19.5321 461.8479 442.3158 3 1030 4283 4283.0 ctx-lh-superiortemporal 111.8215 88.4794 25.4251 461.8479 436.4228 4 17 79 79.0 Left-Hippocampus 75.6666 28.8688 43.2457 131.5358 88.2900
ces.pos-masked.vol.stats
Measure:volume ctx-lh-pericalcarine ctx-lh-postcentral ctx-lh-superiortemporal Left-Hippocampus 0 1408.0 4078.0 4384.0 57.0 1 1246.0 4780.0 4049.0 186.0 2 609.0 4057.0 2990.0 121.0 3 843.0 2928.0 2236.0 146.0 4 1614.0 4003.0 3873.0 232.0
ces.abs-masked.mean.stats
Measure:mean ctx-lh-pericalcarine ctx-lh-postcentral ctx-lh-superiortemporal Left-Hippocampus 0 181.2534 58.9172 82.5216 16.8604 1 162.6065 70.9748 78.5134 -1.1652 2 264.1356 38.3964 73.2994 -42.7581 3 182.7722 74.2692 97.7955 31.554 4 118.7494 57.6731 96.149 10.9517
ces.pos-masked.mean.stats
Measure:mean ctx-lh-pericalcarine ctx-lh-postcentral ctx-lh-superiortemporal Left-Hippocampus 0 198.1904 105.722 107.2234 77.5613 1 232.2992 108.0577 121.9527 37.9277 2 336.5665 111.2593 136.4619 81.3814 3 196.1099 81.4932 127.5857 77.9514 4 120.5139 91.797 113.7618 39.2072