GSL Replacement

GPL is bad and we're going to replace GSL.

Stub library located at: /usr/pubsw/packages/gsl/stub/include/

Files with GSL

• randomfields.h
• mri_cht2p.c
• mri_diff.c -- seems to only include gsl
• mri_glmfit.c -- seems to only include gsl
• mri_mcsim.c -- seems to only include gsl
• mri_stats2reg.c -- seems to only include gsl
• optseq2.c
• fmriutils.c
• fsglm.c
• matrix.c -- lots of matrix functionality that we can replace with vxl
• randomfields.c
• sig.c
• volcluster.c

GSL Types and Functions Used

• gsl_matrix
  • optseq2.c::AR1WhitenMatrix
  • matrix.c::MatrixToGSL
  • matrix.c::MatrixFromGSL
  • matrix.c::MatrixSVDPseudoInverse
• gsl_matrix_alloc
  • matrix.c::MatrixToGSL
  • matrix.c::MatrixSVDPseudoInverse
• gsl_matrix_calloc
  • optseq2.c::AR1WhitenMatrix
• gsl_matrix_free
  • optseq2.c::AR1WhitenMatrix
  • matrix.c::MatrixSVDPseudoInverse
• gsl_matrix_get
  • optseq2.c::AR1WhitenMatrix
  • matrix.c::MatrixFromGSL
• gsl_matrix_set
  • optseq2.c::AR1WhitenMatrix
  • matrix.c::MatrixFromGSL
• gsl_vector
  • matrix.c::MatrixSVDPseudoInverse
  • matrix.c::VectorFromGSL
• gsl_vector_alloc
  • matrix.c::MatrixSVDPseudoInverse
• gsl_vector_free
  • matrix.c::MatrixSVDPseudoInverse
• gsl_vector_get
  • matrix.c::VectorFromGSL
• gsl_vector_set -- not used
• gsl_cdf_fdist_Q
  • fmriutils.c::fMRIsigF
  • fsglm.c::GLMtest
  • randomfields.c::RFstat2PVal
• gsl_cdf_flat_Q
  • randomfields.c::RFstat2PVal
• gsl_cdf_gaussian_Q
  • randomfields.c::RFstat2PVal
• gsl_cdf_tdist_Q
  • randomfields.c::RFstat2PVal
• gsl_cdf_chisq_Q
  • randomfields.c::RFstat2PVal
• gsl_cdf_flat_Qinv
  • randomfields.c::RFp2StatVal
• gsl_cdf_gaussian_Qinv
  • randomfields.c::RFp2StatVal
• gsl_cdf_tdist_Qinv
  • randomfields.c::RFp2StatVal
• gsl_cdf_chisq_Qinv
  • randomfields.c::RFp2StatVal
• gsl_linalg_SV_decomp
  • matrix.c::MatrixSVDPseudoInverse
• gsl_linalg_cholesky_decomp
  • optseq2.c::AR1WhitenMatrix
• gsl_rng_type
  • randomfields.h::RANDOM_FIELD_SPEC, RFS
  • randomfields.h::RFspecInit
  • randomfields.c::RFspecInit
• gsl_rng_ranlux389
  • randomfields.c::RFspecInit
• gsl_rng
  • randomfields.h::RANDOM_FIELD_SPEC, RFS
• gsl_rng_alloc
  • randomfields.c::RFspecInit
• gsl_rng_free
  • randomfields.c::RFspecFree
• gsl_rng_set
  • randomfields.c::RFspecSetSeed
• gsl_ran_flat
  • randomfields.c::RFdrawVal
• gsl_ran_gaussian
  • randomfields.c::RFdrawVal
• gsl_ran_fdist
  • randomfields.c::RFdrawVal
• gsl_ran_tdist
  • randomfields.c::RFdrawVal
• gsl_ran_chisq
  • randomfields.c::RFdrawVal
• gsl_ran_binomial_pdf
  • mri_cht2p.c::main
  • volcluster.c::CSDpvalClustSize