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|| || support for correcting for multiple comparisions: incorporating False Discovery Rate (FDR) and clustering/GRF in the viewer || |
|| || support for correcting for multiple comparisions: || || || incorporate False Discovery Rate (FDR) || || || clustering/GRF: at least generate a script which can be run || |
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|| || mouse selection keys should match those in tksurfer (brucef) || || || optionally display Christophe annotations || |
[wiki:QdecProject top]
Feature List
General |
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Run as an integrate app on Linux, Mac and Windows. (Windows requirement could be fulfilled by Slicer Qdec module). |
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GUI-less module to support usage with XNAT (dan marcus, tim olsen) and usage with Slicer3 (steve pieper and ron kikinis) |
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XNAT: support for local XNAT and client-server XNAT |
Input |
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selection of SUBJECTS_DIR (default taken from enviro on startup) |
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selection of an average subject (default is fsaverage) |
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parse an XML file of stats engine input parameters |
Stats Engine |
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output files wrapped in XML? must be tarballable and able to load (saving all parameters used to create output) |
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support for writing out the fsgd and contrasts without forcing an analysis |
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must work with more than two levels in a discrete factor (up to 11, which is the current default max) |
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allow saving the design covariance matrix |
Display |
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support for correcting for multiple comparisions: |
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incorporate False Discovery Rate (FDR) |
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clustering/GRF: at least generate a script which can be run |
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show residual FWHM |
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hide green-cross hairs (so that it is not visible when a snapshot is taken) |
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lock rotation to x,y,z axes (so that spinning the brain is easier) |
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make sure Ctrl-left click always selects a point on the surface (as OpenGL point selector has no concept of our brain surface, and can pick outside points) |
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vertex data scatter plot: |
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allow saving the plot display and data |
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save plot in .eps format |
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keep plots a constant width, so snapshots are consistent (that is, don't change size from point to point to make room for varying label name widths) |
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allow setting min and max axis values |
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ROI selection (see Jenni's use case, #7) |
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mouse selection keys should match those in tksurfer (brucef) |
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optionally display Christophe annotations |