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|| '''General''' || || || Run as an integrate app on Linux, Mac and Windows. (Windows requirement could be fulfilled by Slicer Qdec module). || || || GUI-less module to support usage with XNAT (dan marcus, tim olsen) and usage with Slicer3 (steve pieper and ron kikinis) || || || XNAT: support for local XNAT and client-server XNAT || || '''Input''' || || || selection of SUBJECTS_DIR (default taken from enviro on startup) || || || selection of an average subject (default is fsaverage) || || || parse an XML file of stats engine input parameters || || '''Stats Engine''' || || || output files wrapped in XML? must be tarballable and able to load (saving all parameters used to create output) || |
|| '''''General''''' || || || Run on app on Linux, Mac and Windows. (Windows requirement could be fulfilled by Slicer Qdec module). || || '''done''' || GUI-less module to support usage with XNAT (dan marcus, tim olsen) and usage with Slicer3 (steve pieper and ron kikinis) || || '''done''' || XNAT: support for local XNAT and client-server XNAT || || '''''Input''''' || || '''done''' || selection of SUBJECTS_DIR (default taken from enviro on startup) || || '''done''' || selection of an average subject (default is fsaverage) || || '''done''' || parse an input file of stats engine input parameters || || '''''Stats Engine''''' || || '''done''' || output files tarballable and able to load (saving all parameters used to create output) || |
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|| '''Display''' || | || '''''Display''''' || |
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|| || incorporate False Discovery Rate (FDR) || || || clustering/GRF: at least generate a script which can be run || |
|| '''done''' || -- incorporate False Discovery Rate (FDR) || || || -- clustering/GRF: at least generate a script which can be run || |
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|| || hide green-cross hairs (so that it is not visible when a snapshot is taken) || | || '''done''' || hide green-cross hairs (so that it is not visible when a snapshot is taken) || |
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|| || make sure Ctrl-left click ''always'' selects a point on the surface (as OpenGL point selector has no concept of our brain surface, and can pick outside points) || | || '''done''' || make sure Ctrl-left click ''always'' selects a point on the surface (as OpenGL point selector has no concept of our brain surface, and can pick outside points) || |
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|| || allow saving the plot display and data || || || save plot in .eps format || || || keep plots a constant width, so snapshots are consistent (that is, don't change size from point to point to make room for varying label name widths) || || || allow setting min and max axis values || || || ROI selection (see Jenni's use case, #7) || |
|| || -- allow saving the plot display and data || || || -- save plot in .eps format || || || -- keep plots a constant width, so snapshots are consistent (that is, don't change size from point to point to make room for varying label name widths) || || || -- allow setting min and max axis values || || '''done''' || ROI selection (see Jenni's use case, #7) || |
[wiki:QdecProject top]
Feature List
General |
|
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Run on app on Linux, Mac and Windows. (Windows requirement could be fulfilled by Slicer Qdec module). |
done |
GUI-less module to support usage with XNAT (dan marcus, tim olsen) and usage with Slicer3 (steve pieper and ron kikinis) |
done |
XNAT: support for local XNAT and client-server XNAT |
Input |
|
done |
selection of SUBJECTS_DIR (default taken from enviro on startup) |
done |
selection of an average subject (default is fsaverage) |
done |
parse an input file of stats engine input parameters |
Stats Engine |
|
done |
output files tarballable and able to load (saving all parameters used to create output) |
|
support for writing out the fsgd and contrasts without forcing an analysis |
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must work with more than two levels in a discrete factor (up to 11, which is the current default max) |
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allow saving the design covariance matrix |
Display |
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support for correcting for multiple comparisions: |
done |
-- incorporate False Discovery Rate (FDR) |
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-- clustering/GRF: at least generate a script which can be run |
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show residual FWHM |
done |
hide green-cross hairs (so that it is not visible when a snapshot is taken) |
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lock rotation to x,y,z axes (so that spinning the brain is easier) |
done |
make sure Ctrl-left click always selects a point on the surface (as OpenGL point selector has no concept of our brain surface, and can pick outside points) |
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vertex data scatter plot: |
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-- allow saving the plot display and data |
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-- save plot in .eps format |
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-- keep plots a constant width, so snapshots are consistent (that is, don't change size from point to point to make room for varying label name widths) |
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-- allow setting min and max axis values |
done |
ROI selection (see Jenni's use case, #7) |
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mouse selection keys should match those in tksurfer (brucef) |
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optionally display Christophe annotations |