General

Run as an integrate app on Linux, Mac and Windows. (Windows requirement could be fulfilled by Slicer Qdec module).

GUI-less module to support usage with XNAT (dan marcus, tim olsen) and usage with Slicer3 (steve pieper and ron kikinis)

XNAT: support for local XNAT and client-server XNAT

Input

selection of SUBJECTS_DIR (default taken from enviro on startup)

selection of an average subject (default is fsaverage)

parse an XML file of stats engine input parameters

Stats Engine

output files wrapped in XML? must be tarballable and able to load (saving all parameters used to create output)

support for writing out the fsgd and contrasts without forcing an analysis

must work with more than two levels in a discrete factor (up to 11, which is the current default max)

allow saving the design covariance matrix

Display

support for correcting for multiple comparisions: incorporating False Discovery Rate (FDR) and clustering/GRF in the viewer

show residual FWHM

hide green-cross hairs (so that it is not visible when a snapshot is taken)

lock rotation to x,y,z axes (so that spinning the brain is easier)

make sure Ctrl-left click always selects a point on the surface (as OpenGL point selector has no concept of our brain surface, and can pick outside points)

vertex data scatter plot:

allow saving the plot display and data

save plot in .eps format

keep plots a constant width, so snapshots are consistent (that is, don't change size from point to point to make room for varying label name widths)

allow setting min and max axis values

ROI selection (see Jenni's use case, #7)