[wiki:QdecProject top]
Feature List
|
General: |
|
Run on app on Linux, Mac and Windows. (Windows requirement could be fulfilled by Slicer Qdec module). |
done |
GUI-less module to support usage with XNAT (dan marcus, tim olsen) and usage with Slicer3 (steve pieper and ron kikinis) |
done |
XNAT: support for local XNAT and client-server XNAT |
|
volumetric analysis |
|
Input: |
done |
selection of SUBJECTS_DIR (default taken from enviro on startup) |
done |
selection of an average subject (default is fsaverage) |
done |
parse an input file of stats engine input parameters |
|
Stats Engine: |
done |
output files tarballable and able to load (saving all parameters used to create output) |
|
support for writing out the fsgd and contrasts without forcing an analysis |
|
must work with more than two levels in a discrete factor (up to 11, which is the current default max) |
|
allow saving the design covariance matrix |
|
Display: |
|
support for correcting for multiple comparisions: |
done |
-- incorporate False Discovery Rate (FDR) |
|
-- clustering/GRF: at least generate a script which can be run |
|
show residual FWHM |
done |
hide green-cross hairs (so that it is not visible when a snapshot is taken) |
|
lock rotation to x,y,z axes (so that spinning the brain is easier) |
done |
make sure Ctrl-left click always selects a point on the surface (as OpenGL point selector has no concept of our brain surface, and can pick outside points) |
|
vertex data scatter plot: |
|
-- allow saving the plot display and data |
|
-- save plot in .eps format |
|
-- keep plots a constant width, so snapshots are consistent (that is, don't change size from point to point to make room for varying label name widths) |
|
-- allow setting min and max axis values |
done |
ROI selection (see Jenni's use case, #7) |
|
mouse selection keys should match those in tksurfer (brucef) |
|
optionally display Christophe annotations |
|
display raw average thickness data, via 'mri_concat --i y.mgh --mean --o y-mean.mgh' |