recon-all -s bert -all runtime comparison
platform comparison
CPU |
RAM |
HD |
OS |
Freesurfer build-stamp |
runtime |
||
model |
chipset |
freq |
|
|
|
|
|
2x Intel Xeon E5420 |
Intel 5400NB |
2.50 GHz |
8GB |
SATA 72000rpm |
Ubuntu 8.04 |
freesurfer-Linux-centos4_x86_64-stable-pub-v4.0.5 |
20 h |
2x Intel Xeon X5355 |
Intel 5000X |
2.66 GHz |
16GB |
SATA 7200rpm |
Ubuntu 8.04 |
freesurfer-Linux-centos4_x86_64-stable-pub-v4.0.1 |
20.5h |
2x Intel Xeon 5150 |
Intel 5000P |
2.66GHz |
7GB |
SATA |
|
freesurfer-Darwin-tiger-i686-stable-pub-v4.0.1-full.dmg |
24.25 h |
2x Intel Xeon E5320 |
|
1.86 GHz |
12GB |
SATA |
Ubuntu 7.10 |
freesurfer-Linux-rh9-stable-pub-v4.0.1-full.tar.gz |
29.5 |
2x Intel Xeon E5310 |
Intel 5000P |
1.6 GHz |
4GB |
SATA |
|
freesurfer-Linux-centos4_x86_64-stable-pub-v4.0.1 |
30 h |
2x Intel Xeon |
|
2.8GHz |
4GB |
SATA |
Centos 4.5 |
freesurfer-Linux-centos4-stable-pub-v4.0.2 |
35.25h |
2x Intel Xeon 5050 |
Intel 5000V |
3GHz |
8GB |
SATA |
|
freesurfer-Linux-centos4_x86_64-stable-pub-v4.0.0 |
36.8 h |
2x Intel Dual Core |
(MacMini) |
1.66GHz |
1GB |
Sata |
Mac OS X 10.5.2 |
freesurfer-Darwin-tiger-stable-pub-v4.0.2-full.dmg |
40.1h |
2x PowerPC G5 |
|
2.7GHz |
8GB |
|
Mac OS X 10.5 |
freesurfer-Darwin-tiger-stable-pub-v4.0.2-full.dmg |
47h |
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breakdown
v3.0.5 run on AMD Opteron 64bit 2.5GHz processor
v4.0.1 run on Intel Xeon 3.0GHz processor
stage |
v3.0.5 |
v4.0.1 |
-motioncor |
< 5 min |
10 min |
-nuintensitycor |
3 min |
1 min |
-talairach |
1 min |
2 min |
-normalization |
5 min |
5 min |
-skullstrip |
2 min |
30 min |
-gcareg |
8 min |
16 min |
-canorm |
1 min |
3 min |
-careg |
10 hours |
11 hours |
-rmneck |
3 min |
3 min |
-skull-lta |
9 min |
22 min |
-calabel |
30 min |
8 hours |
-normalization2 |
3 min |
6 min |
-segmentation |
4 min |
4 min |
-fill |
1 min |
2 min |
per hemisphere:
-tessellate |
< 1 min |
2 min |
-smooth1 |
< 1 min |
< 1 min |
-inflate1 |
1 min |
2 min |
-qsphere |
16 min |
22 min |
-fix |
1-2 hours |
1 hour |
-finalsurfs |
1-2 hours |
2 hours |
-smooth2 |
< 1 min |
1 min |
-inflate2 |
2 min |
2 min |
-cortribbon |
< 1 min |
3 min |
-sphere |
1-2 hours |
2-4 hours |
-surfreg |
1 hour |
5 hours |
-contrasurfreg |
1 hour |
- |
-avgcurv |
< 1 min |
1 min |
-cortparc |
1 min |
1 min |
-parcstats |
< 1 min |
1 min |
-cortparc2 |
1 min |
1 min |
-parcstats2 |
< 1 min |
1 min |
both hemispheres:
-volmask |
|
30 min |
-aparc2aseg |
1 min |
12 min |
-wmparc |
|
1 hour |
-all |
26 hours |
48 hours |