Index TableOfContents
Name
stxgrinder-sess - compute contrasts based on GeneralLinearModel
Synopsis
stxgrinder-sess - ??
Arguments
Required Flagged Arguments
??
Optional Flagged Arguments
-a <analysisname> |
session-level functional analysis name |
-c <contrast> [<-c contrast>] |
contrasts |
-all |
compute all contrasts for given analysis |
-space <spacename> |
space in which to average (native, tal, sph) |
-spacedir <spacedir> |
space directory (default spacename) |
-hemi <hemisphere> |
with sph space <lh rh> |
-fdofmax <dofmax> |
max dof for F-test |
-sf <sessidfile> |
... |
-df <srchdirfile> |
... |
-s <sessid> |
... |
-d <srchdir> |
... |
-help |
|
-umask <umask> |
set unix file permission mask |
-version |
print version and exit |
Outputs
volume1 |
description |
volume2 |
description |
Description
description
Examples
Example 1
??
Example 2
??
Bugs
The program occasionally hangs when performing the F-test. This is caused when the DOF is very large (eg, > 1000). This ofen happens when analyzing group fixed effects. If the program appears to hang, reduce FtestDOFMax with -fdofmax until it seems to run ok. You can also just skip the F-test with -noftest.
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
description description
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>