FreeSurfer Tutorial and Workshop in São Paulo, Brazil

16, 17, & 18 (Sat.,Sun.,Mon.) April 2011

The FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of FreeSurfer. Topics are listed below. There are 40 available spots for this course (see course registration).

Computers will be provided to all pairs of registrants, which will have FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer).

The course will be held at São Paulo healthcare complex of HCFMUSP.

Contact: Pedro Paulo de M. Oliveira Jr. ( ppj at netfilter dot com dot br )

Location

Hospital das Clínicas - Avenida Dr Eneas de Carvalho Aguiar, 44 - São Paulo - SP - Brazil - (hotel,map)

The course will be held at the Radiology Center Building, in the Amphitheatre C.

Saturday, 16 April - Introduction / Single Subject / Troubleshooting

Time

Title

Type

Lecturer

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly

tutorial

Pedro Paulo de M. Oliveira Jr.

9:30 - 10:00

Intro to FreeSurfer Jargon

talk

Pedro Paulo de M. Oliveira Jr.

10:00 - 10:30

Introduction to Freesurfer

talk

Nick Schmansky

10:30 - 11:00

FreeSurfer Applications, Publications

talk

Nick Schmansky

11:00 - 11:30

break

11:30 - 12:30

Analyzing the Individual Subject

talk

Allison Stevens

12:30 - 1:30

lunch

--

--

1:30 - 2:00

Tkmedit/Tksurfer demonstration

demo

Nick Schmansky

2:00 - 3:00

Interaction with Individual Subject Data Tutorial

tutorial

staff

3:00 - 3:30

break

3:30- 4:00

Failure Modes

talk

Allison Stevens

4:00 - 4:30

Quality Checking a Recon

demo

Allison Stevens

4:30 - 5:30

Troubleshooting Demonstration, Troubleshooting Tutorial

tutorial

staff, Allison

Sunday, 17 April - Group Analysis / Registration / Longitudinal / ROIs

Time

Title

Type

Lecturer

9:00 - 10:00

Group Analysis / GLM / Multiple Comparisons

talk

Lilla Zollei

10:00 - 10:30

QDEC demonstration

demo

Nick Schmansky

10:30 - 10:45

break

10:45 - 11:15

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

11:15 - 11:45

Group Analysis - qdec Tutorial

tutorial

staff

11:45 - 1:00

lunch

--

--

1:00 - 1:45

Registration Methods

talk

Lilla Zollei

2:15 - 2:45

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Lilla Zollei

2:45 - 3:00

break

3:00 - 3:30

ROI Analysis

talk

Allison Stevens

3:30 - 4:00

A Non-physicist's Intro to MR SpinBench

talk

Andre van der Kouwe

4:00 - 4:30

ROI Analysis Tutorial

tutorial

staff

4:30 - 5:00

Longitudinal Tutorial

tutorial

staff

Monday, 18 April - Diffusion / Tracula / MRI basics / Apps / Q&A

Time

Title

Type

Lecturer

9:00 - 9:30

Diffusion Data Processing,dtrecon intro

talk

Lilla Zollei

9:30 - 10:30

Diffusion Processing Tutorial

tutorial

staff

10:30 - 11:00

break and group photo

11:00 - 11:30

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Lilla Zollei

11:30 - 12:30

Tracula Tutorial

tutorial

staff

12:30 - 1:30

lunch

--

--

1:30 - 2:00

MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

2:00 - 2:30

break and evaluations

2:30 - 3:00

Motion-compensated neuroanatomical imaging

talk

Andre van der Kouwe

3:00 - 3:30

iSurf and local FreeSurfer Applications

talk

Pedro Paulo de M. Oliveira Jr.

3:30 - 4:00

Question and Answer Session, FsQuiz

talk

staff

FsTutorial/BrazilCourseSchedule (last edited 2011-03-11 08:53:24 by AllisonStevens)