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| ||2:00 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/freesurfer.intro.mmclass.ppt|Introduction to Freesurfer]] ||talk ||Doug Greve || ||2:45 - 3:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve || ||3:15 - 3:30 ||'''break''' || || || ||3:30 - 4:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fsrecon.ppt|Analyzing the Individual Subject, continued]] ||talk ||Doug Greve || ||4:10 - 4:30 ||Freeview demonstration ||demo ||Allison Moreau || ||4:30 - 5:00 ||[[FsTutorial/OutputData_freeview|Inspection of Freesurfer Output]] ||tutorial ||staff || ||5:00 - 5:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/freesurfer.failure_modes.ppt|Troubleshooting]] ||talk ||Allison Moreau || |
||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer.intro.mmclass.ppt|Introduction to Freesurfer]] ||talk ||Doug Greve || ||2:30 - 3:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve || ||3:40 - 4:00 ||'''break''' || || || ||4:00 - 4:20 ||Freeview demonstration ||demo ||Allison Moreau || ||4:20 - 5:00 ||[[FsTutorial/OutputData_freeview|Inspection of Freesurfer Output]] ||tutorial ||staff || ||5:00 - 5:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer_failuremodes_ALM.ppt|Troubleshooting]] ||talk ||Allison Moreau || |
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| ||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/freesurfer.groupanalysis.ppt|Group Analysis / GLM]] ||talk ||Martin Reuter || | ||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer.groupanalysis.ppt|Group Analysis / GLM]] ||talk ||Martin Reuter || |
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| ||10:35 - 10:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/freesurfer.multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Martin Reuter || | ||10:35 - 10:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer.multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Martin Reuter || |
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== Additional Useful Information == === During the Course === * [[FsTutorial/Data|Getting the tutorial data]] (necessary only if you are not taking a formal course where data is provided) '''DO NOT attempt this during a course!''' Contact a staff member for instructions on how to get this data locally during the course. * Using a Mac & need a text editor? Download gedit, [[http://ftp.gnome.org/pub/GNOME/binaries/mac/gedit/3.2/gedit-3.2.6-3_SnowLeopard_64bit.dmg|here]]. * [[FsTutorial/Scripts|Scripts & aliases]] * [[FsTutorial/Glossary|Glossary]] ## * '''Taxi''' phone numbers can be found [[http://www.cityofboston.gov/police/hackney/companies.asp|here]]. === After the Course === * Home page: http://surfer.nmr.mgh.harvard.edu * [[https://www.zotero.org/freesurfer|Publications]] * Mailing list: send mail to majordomo@surfer.nmr.mgh.harvard.edu with the following command in the body of your email message: subscribe freesurfer * How to cite !FreeSurfer is on the FreeSurferMethodsCitation page. * [[SystemRequirements|System Requirements for Installation]] * [[http://itunes.apple.com/us/app/isurf-brainview/id381072423?mt=8|iSurf]] - iPhone/iPad app to view !FreeSurfer segmentations ## * [[FsTutorial/SnapShot|PDF and HTML snapshot]] ## * 4pp PDFs: [[attachment:intro4pp.pdf]], [[attachment:recon4pp.pdf]], [[attachment:group4pp.pdf]] [[attachment:feat4pp.pdf]] * [[FsTutorial/Acknowledgements|Acknowledgements]] ## * [[ConferenceRoomA| Conference Room A]] ## * [[FsTutorial/CourseChecklist| Course checklist (internal)]] ## * [[FsTutorial/Exercises|Listing of all exercises]] ## * [[FsTutorial/Tools|FreeSurfer tools]] |
Multimodal Short Course, FreeSurfer/FS-FAST, April 30 & May 1, 2015
MGH- Charlestown Navy Yard
Thursday, April 30 - Introduction / Single Subject / Troubleshooting
Time |
Title |
Type |
Lecturer |
2:00 - 2:30 |
talk |
Doug Greve |
|
2:30 - 3:40 |
talk |
Doug Greve |
|
3:40 - 4:00 |
break |
|
|
4:00 - 4:20 |
Freeview demonstration |
demo |
Allison Moreau |
4:20 - 5:00 |
tutorial |
staff |
|
5:00 - 5:30 |
talk |
Allison Moreau |
|
5:30 - 6:00 |
tutorial |
staff |
Friday, May 1 - Surface-based Smoothing and Registration / Group Analysis / FS-FAST
Time |
Title |
Type |
Lecturer |
9:00 - 9:40 |
talk |
Doug Greve |
|
9:40 - 10:20 |
talk |
Martin Reuter |
|
10:20 - 10:35 |
break |
|
|
10:35 - 10:55 |
talk |
Martin Reuter |
|
10:55 - 11:15 |
QDEC demonstration |
demo |
Martin Reuter |
11:15 - 12:00 |
tutorial |
staff |
|
12:00 - 12:45 |
tutorial |
staff |
|
12:45 - 2:00 |
lunch |
|
|
2:00 - 3:15 |
talk |
Doug Greve |
|
3:15 - 4:00 |
talk |
Doug Greve |
|
4:00 - 4:15 |
break |
|
|
4:15 - 5:00 |
talk |
Doug Greve |
|
5:00 - 6:00 |
tutorial |
staff |
Additional Useful Information
During the Course
Getting the tutorial data (necessary only if you are not taking a formal course where data is provided) DO NOT attempt this during a course! Contact a staff member for instructions on how to get this data locally during the course.
Using a Mac & need a text editor? Download gedit, here.
After the Course
Home page: http://surfer.nmr.mgh.harvard.edu
Mailing list: send mail to majordomo@surfer.nmr.mgh.harvard.edu with the following command in the body of your email message: subscribe freesurfer
How to cite FreeSurfer is on the FreeSurferMethodsCitation page.
iSurf - iPhone/iPad app to view FreeSurfer segmentations