Diff for "FsTutorial/MultiModal2015CourseSchedule"

Differences between revisions 3 and 15 (spanning 12 versions)

Multimodal Short Course, FreeSurfer/FS-FAST, April 30 & May 1, 2015

MGH- Charlestown Navy Yard

Multi Modal Short Course

Thursday, April 30 - Introduction / Single Subject / Troubleshooting

Time	Title	Type	Lecturer
2:00 - 2:30	Introduction to Freesurfer	talk	Doug Greve
2:30 - 3:40	Analyzing the Individual Subject	talk	Doug Greve
3:40 - 4:00	break
4:00 - 4:20	Freeview demonstration	demo	Allison Moreau
4:20 - 5:00	Inspection of Freesurfer Output	tutorial	staff
5:00 - 5:30	Troubleshooting	talk	Allison Moreau
5:30 - 6:00	Troubleshooting Tutorial	tutorial	staff

Friday, May 1 - Surface-based Smoothing and Registration / Group Analysis / FS-FAST

Time	Title	Type	Lecturer
9:00 - 9:40	Surface-based Smoothing/Surface-based Registration	talk	Doug Greve
9:40 - 10:20	Group Analysis / GLM	talk	Martin Reuter
10:20 - 10:35	break
10:35 - 10:55	Multiple Comparisons	talk	Martin Reuter
10:55 - 11:15	QDEC demonstration	demo	Martin Reuter
11:15 - 12:00	Group Analysis / Multiple Comparisons - mri_glmfit	tutorial	staff
12:00 - 12:45	Group Analysis - qdec	tutorial	staff
12:45 - 2:00	lunch
2:00 - 3:15	Basics of fMRI Analysis	talk	Doug Greve
3:15 - 4:00	Functional Analysis with FS-FAST	talk	Doug Greve
4:00 - 4:15	break
4:15 - 5:00	Functional Analysis with FS-FAST, continued	talk	Doug Greve
5:00 - 6:00	FS-FAST Tutorial	tutorial	staff

Additional Useful Information

During the Course

Getting the tutorial data (necessary only if you are not taking a formal course where data is provided) DO NOT attempt this during a course! Contact a staff member for instructions on how to get this data locally during the course.
Using a Mac & need a text editor? Download gedit, here.
Scripts & aliases
Glossary

After the Course

Home page: http://surfer.nmr.mgh.harvard.edu
Publications
Mailing list: send mail to majordomo@surfer.nmr.mgh.harvard.edu with the following command in the body of your email message: subscribe freesurfer
How to cite FreeSurfer is on the FreeSurferMethodsCitation page.
System Requirements for Installation
iSurf - iPhone/iPad app to view FreeSurfer segmentations

Acknowledgements

FsTutorial/MultiModal2015CourseSchedule (last edited 2015-04-30 12:41:39 by 172)

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-=== MGH, Charlestown Navy Yard,  ===
+=== MGH- Charlestown Navy Yard ===
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+||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer.intro.mmclass.ppt|Introduction to Freesurfer]] ||talk ||Doug Greve ||
||2:30 - 3:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
||3:40 - 4:00 ||'''break''' || || ||
||4:00 - 4:20 ||Freeview demonstration ||demo ||Allison Moreau ||
||4:20 - 5:00 ||[[FsTutorial/OutputData_freeview|Inspection of Freesurfer Output]] ||tutorial ||staff ||
||5:00 - 5:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer_failuremodes_ALM.ppt|Troubleshooting]] ||talk ||Allison Moreau ||
||5:30 - 6:00 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
-Line 10:
+Line 16:
-|| '''Time''' || '''Title''' || '''Type''' || '''Lecturer''' ||
||1:45 - 2:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial+fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk || Allison Moreau ||
|| 2:00 - 2:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/freesurfer.intro.mmclass.ppt|Introduction to Freesurfer|&do=get]]|| talk || Doug Greve ||
|| 2:30 - 3:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Doug Greve ||
|| 3:30 - 3:45  || Freeview demonstration || demo || Allison Moreau ||
|| 3:45 - 4:00 || '''break''' || || ||
|| 4:00 - 4:45 || [[FsTutorial/OutputData_freeview|Inspection of Freesurfer Output]] || tutorial || staff ||
|| 4:45 - 5:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/freesurfer.failure_modes.ppt|Troubleshooting|&do=get]] || talk || Allison Moreau ||
|| 5:15 - 6:00 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] || tutorial || staff ||
-Line 21:
+Line 18:
+||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration]] ||talk ||Doug Greve ||
||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer.groupanalysis.ppt|Group Analysis / GLM]] ||talk ||Martin Reuter ||
||10:20 - 10:35 ||'''break''' || || ||
||10:35 - 10:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer.multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Martin Reuter ||
||10:55 - 11:15 ||QDEC demonstration ||demo ||Martin Reuter ||
||11:15 - 12:00 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit]] ||tutorial ||staff ||
||12:00 - 12:45 ||[[FsTutorial/QdecGroupAnalysis_freeview|Group Analysis - qdec]] ||tutorial ||staff ||
||12:45 - 2:00 ||'''lunch''' || || ||
||2:00 - 3:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fmri.april2011.ppt|Basics of fMRI Analysis]] ||talk ||Doug Greve ||
||3:15 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fsfast.april2011.ppt|Functional Analysis with FS-FAST]] ||talk ||Doug Greve ||
||4:00 - 4:15 ||'''break''' || || ||
||4:15 - 5:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fsfast.april2011.ppt|Functional Analysis with FS-FAST, continued]] ||talk ||Doug Greve ||
||5:00 - 6:00 ||[[FsFastTutorialV5.1_freeview|FS-FAST Tutorial]] ||tutorial ||staff ||
-Line 22:
+Line 33:
-|| '''Time''' || '''Title''' || '''Type''' || '''Lecturer''' ||
|| 9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve ||
|| 9:30 - 10:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/freesurfer.groupanalysis.ppt|Group Analysis / GLM|&do=get]] || talk || tbd ||
|| 9:30 - 10:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/freesurfer.multiplecomparisons.ppt|Multiple Comparisons|&do=get]] || talk || tbd ||
|| 10:30 - 10:45 || QDEC demonstration || demo || tbd ||
|| 10:45 - 11:00 || '''break''' || || ||
|| 11:00 - 12:00 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit]] || tutorial || staff ||
|| 12:00 - 12:45 || [[FsTutorial/QdecGroupAnalysis_freeview|Group Analysis - qdec]] || tutorial || staff ||
|| 12:45 - 1:45|| '''lunch''' || || ||
|| 1:45 - 3:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fmri.april2011.ppt|Basics of fMRI Analysis|&do=get]] ||talk ||Doug Greve||
|| 3:00 - 3:40 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fsfast.april2011.ppt|Functional Analysis with FS-FAST|&do=get]] || talk || Doug Greve ||
|| 3:40 - 3:55 || '''break''' || || ||
|| 3:55 - 4:35 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fsfast.april2011.ppt|Functional Analysis with FS-FAST|&do=get]] || talk || Doug Greve ||
|| 4:35 - 5:35 || [[FsFastTutorialV5.1_freeview|FSFAST Tutorial]] || tutorial || staff ||
+== Additional Useful Information ==
=== During the Course ===
 * [[FsTutorial/Data|Getting the tutorial data]] (necessary only if you are not taking a formal course where data is provided) '''DO NOT attempt this during a course!''' Contact a staff member for instructions on how to get this data locally during the course.
 * Using a Mac & need a text editor? Download gedit, [[http://ftp.gnome.org/pub/GNOME/binaries/mac/gedit/3.2/gedit-3.2.6-3_SnowLeopard_64bit.dmg|here]].
 * [[FsTutorial/Scripts|Scripts & aliases]]
 * [[FsTutorial/Glossary|Glossary]]
## * '''Taxi''' phone numbers can be found [[http://www.cityofboston.gov/police/hackney/companies.asp|here]].


=== After the Course ===
 * Home page: http://surfer.nmr.mgh.harvard.edu
 * [[https://www.zotero.org/freesurfer|Publications]]
 * Mailing list: send mail to majordomo@surfer.nmr.mgh.harvard.edu with the following command in the body of your email message: subscribe freesurfer
 * How to cite !FreeSurfer is on the FreeSurferMethodsCitation page.
 * [[SystemRequirements|System Requirements for Installation]]
 * [[http://itunes.apple.com/us/app/isurf-brainview/id381072423?mt=8|iSurf]] - iPhone/iPad app to view !FreeSurfer segmentations
## * [[FsTutorial/SnapShot|PDF and HTML snapshot]]
## * 4pp PDFs: [[attachment:intro4pp.pdf]], [[attachment:recon4pp.pdf]], [[attachment:group4pp.pdf]] [[attachment:feat4pp.pdf]]
 * [[FsTutorial/Acknowledgements|Acknowledgements]]
## * [[ConferenceRoomA| Conference Room A]]
## * [[FsTutorial/CourseChecklist| Course checklist (internal)]]
## * [[FsTutorial/Exercises|Listing of all exercises]]
## * [[FsTutorial/Tools|FreeSurfer tools]]