FreeSurfer Course, September 28 - Oct 1

8:00 - 9:30am Registration Desk Open

Monday, September 28th - Introduction / Single Subject Analysis / Troubleshooting

Time

Title

Type

Lecturer

8:30 - 9:00

optional - Unix Tutorial for FreeSurfer Users

talk/tutorial

Allison Moreau

9:00 - 9:15

optional - Intro to FreeSurfer Jargon

talk

Allison Moreau & Lilla Zollei

9:15 - 9:30

break

9:30 - 10:00

Introduction to Freesurfer

talk

Bruce Fischl

10:00 - 11:10

Analyzing the Individual Subject

talk

Bruce Fischl

11:10 - 11:30

break

11:30 - 11:45

Freeview demonstration

demo

Lee Tirrell

11:45 - 12:00

Interaction with Individual Subject Data Tutorial

tutorial

staff

12:00 - 1:00

Lunch (Suggestions for where to eat)

--

--

1:00 - 1:45

Interaction with Individual Subject Data Tutorial

tutorial

staff

1:45 - 2:15

FreeSurfer Troubleshooting

talk

Bruce Fischl

2:15 - 2:35

break

2:35 - 3:35

Quality Checking a Recon

demo

Ani Varjabedian

3:35 - 4:35

Troubleshooting Tutorial

tutorial

staff

Answers to online questions here

Tuesday, September 29th - Group Analysis / Longitudinal Analysis / ROI Analysis

Time

Title

Type

Lecturer

9:00 - 9:30

optional - A Non-physicist's Intro to MR SpinBench

talk

Dylan Tisdall

9:30 - 10:00

Surface-based Analysis: Intersubject Registration & Smoothing

talk

Lilla Zollei

10:00 - 10:40

Group Analysis

talk

Emily Lindemer

10:40 - 11:00

break

11:00 - 11:40

Group Analysis Tutorial

tutorial

staff

11:40 - 12:00

Multiple Comparisons

talk

Emily Lindemer

12:00 - 1:00

Lunch

--

--

1:00 - 1:20

Multiple Comparisons Tutorial

tutorial

staff

1:20 - 1:40

QDEC demonstration

demo

Martin Reuter

1:40 - 2:20

QDEC Tutorial

tutorial

staff

2:20 - 2:40

break

2:40 - 3:25

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

3:25 - 4:05

Longitudinal Tutorial

tutorial

staff

4:05 - 4:20

break

4:20 - 4:50

ROI Analysis

talk

Martin Reuter

4:50 - 5:20

ROI Analysis Tutorial

tutorial

staff

6:15 - ?

Boston Beer Works

social activity

staff

Answers to online questions here

Boston Beer Works location information here and here.
Meet us in front of Building 149 to catch the 6:15pm shuttle bus (it leaves on time!).
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street.
Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that).

Wednesday, September 30th - Multimodal Analysis / fMRI / Diffusion

Time

Title

Type

Lecturer

9:00 - 9:30

Multi-Modal Integration, Part 1

talk

Lilla Zollei

9:30 - 10:10

Introduction to Diffusion MRI

talk

Anastasia Yendiki

10:10 - 10:40

Diffusion Processing Tutorial

tutorial

staff

10:40 - 10:55

break

10:55 - 11:25

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

11:25 - 12:00

Tracula Tutorial

tutorial

staff

12:00 - 12:15

Longitudinal TRACULA

talk

Anastasia Yendiki

12:15 - 1:15

Lunch

--

--

1:15 - 1:45

optional - A Non-Physicist's Intro to Diffusion MRI Physics

talk

Dylan Tisdall

1:45 - 2:45

Basics of fMRI Analysis

talk

Jon Polimeni

2:45 - 3:05

break & Evaluation

3:05 - 4:15

FSFAST

talk

Natalia Zaretskaya

4:15 - 5:15

FSFAST Tutorial

tutorial

staff

Answers to online questions here

Thursday, October 1st - Multimodal Analysis / MRI Acquisition Tips / Future Directions

Time

Title

Type

Lecturer

9:00 - 9:30

Multi-Modal Integration, Part 2

talk

Lilla Zollei

9:30 - 10:30

Multi-Modal Integration Tutorial

tutorial

staff

10:30 - 10:50

break

10:50 - 11:20

An Overview of Registration Methods

talk

Lilla Zollei

11:20 - 11:50

MRI Acquisition Methods

talk

Andre van der Kouwe

11:50 - 12:50

Lunch

--

--

12:50 - 1:20

Motion-compensated Neuroanatomical Imaging

talk

Dylan Tisdall

1:20 - 2:00

Future Directions

talk

Bruce Fischl

2:00 - 2:30

Question & Answer session

--

staff

Answers to online questions here

FsTutorial/Sept2015CourseSchedule (last edited 2017-09-26 11:31:49 by MorganFogarty)