FreeSurfer Course, September 26-29

Copy of all course slides compiled as a book can be found here.

Our awesome FreeSurfer shirts can be purchased here.

8:00 - 9:30am Registration Desk Open

* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk that covers basic/beginner material.

Monday, September 26th - Introduction / Single Subject Analysis / ROI Analysis / MR Acquisition

Time

Title

Type

Lecturer

8:30 - 9:00

** Intro to Linux for FreeSurfer Users

talk/demo

Zeke Kaufman

9:00 - 9:15

** Intro to FreeSurfer Jargon

talk

Allison Stevens & Lilla Zöllei

9:15 - 9:30

break

9:30 - 10:00

Introduction to Freesurfer

talk

Bruce Fischl

10:00 - 11:10

Analyzing the Individual Subject

talk

Doug Greve

11:10 - 11:30

break

11:30 - 11:45

Freeview demonstration

demo

Allison Moreau

11:45 - 12:15

Interaction with Individual Subject Data Tutorial

tutorial

staff

12:15 - 1:15

Lunch (Suggestions for where to eat)

--

--

1:15 - 1:45

Interaction with Individual Subject Data Tutorial

tutorial

staff

1:45 - 2:15

Surface-based Analysis: Intersubject Registration & Smoothing

talk

Lilla Zöllei

2:15 - 2:35

break

2:35 - 3:05

ROI Analysis

talk

Doug Greve

3:05 - 3:55

ROI Analysis Tutorial

tutorial

staff

3:55 - 4:25

** A Non-physicist's Intro to MR (SpinBench)

talk

Dylan Tisdall

4:25 - 4:55

* MRI Acquisition Methods

talk

André van der Kouwe

4:55 - 5:15

* Motion-compensated Neuroanatomical Imaging

talk

Dylan Tisdall

Answers to online questions here

Tuesday, September 27th - Group Analysis / Longitudinal Analysis / Troubleshooting

Time

Title

Type

Lecturer

9:00 - 9:50

Group Analysis

talk

Emily Lindemer

9:50 - 10:30

Group Analysis Tutorial

tutorial

staff

10:30 - 10:50

break

10:50 - 11:10

Multiple Comparisons

talk

Doug Greve

11:10 - 11:30

Multiple Comparisons Tutorial

tutorial

staff

11:30 - 11:50

QDEC demonstration

demo

Doug Greve

11:50 - 12:50

Lunch

--

--

12:50 - 1:30

QDEC Tutorial

tutorial

staff

1:30 - 2:15

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Lilla Zöllei

2:15 - 2:55

Longitudinal Tutorial

tutorial

staff

2:55 - 3:25

FreeSurfer Troubleshooting

talk

Bruce Fischl

3:25 - 3:45

break

3:45 - 4:45

Troubleshooting Tutorial

tutorial

staff

4:45 - 5:45

Quality Checking a Recon

demo

Allison Stevens

6:30 - ?

Boston Beer Works

social activity

staff

Answers to online questions here

Boston Beer Works location information here and here.
Meet us in front of Building 149 to catch the 6:30pm shuttle bus (it leaves on time!).
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street.
Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that).

Wednesday, September 28th - Multimodal Analysis / Diffusion Analysis / fMRI Analysis

Time

Title

Type

Lecturer

9:00 - 9:30

Multi-Modal Integration, Part 1: Registration

talk

Lilla Zöllei

9:30 - 10:00

Multi-Modal Integration Tutorial: Multimodal Registration

tutorial

staff

10:00 - 10:15

** A Non-Physicist's Intro to Diffusion MRI Physics

talk

Dylan Tisdall

10:15 - 10:35

break

10:35 - 11:15

Introduction to Diffusion MRI

talk

Anastasia Yendiki

11:15 - 12:00

Diffusion Processing Tutorial

tutorial

staff

12:00 - 1:00

Lunch

--

--

1:00 - 2:00

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

2:00 - 3:00

Tracula Tutorial

tutorial

staff

3:00 - 3:10

Longitudinal TRACULA

talk

Anastasia Yendiki

3:10 - 3:30

break

3:30 - 4:30

Basics of fMRI Analysis

talk

Jon Polimeni

4:30 - 5:10

FSFAST, Part 1: Preprocessing

talk

Doug Greve

Answers to online questions here

Thursday, September 29th - fMRI Analysis / Multimodal Analysis / Future Directions

Time

Title

Type

Lecturer

9:00 - 9:40

FSFAST, Part 2: GLM Analysis

talk

Doug Greve

9:40 - 10:40

FSFAST Tutorial

tutorial

staff

10:40 - 11:00

break & Evaluation

11:00 - 11:30

Multi-Modal Integration, Part 2

talk

Doug Greve

11:30 - 12:00

Multi-Modal Integration Tutorial: fMRI Integration & Surface-based Group fMRI Analysis

tutorial

staff

12:00 - 1:00

Lunch

--

--

1:00 - 1:40

* An Overview of Registration Methods

talk

Lilla Zöllei

1:40 - 2:25

Future Directions

talk

Bruce Fischl

2:25 - 2:45

Question & Answer Session

--

staff

Answers to online questions here

* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk covering basic/beginner material.

FsTutorial/Sept2016CourseSchedule (last edited 2017-09-26 11:31:11 by MorganFogarty)