Diff for "FsTutorial/Sept2016CourseSchedule"

Differences between revisions 3 and 7 (spanning 4 versions)

FreeSurfer Course, September 26-29

8:00 - 9:30am Registration Desk Open

* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk covering basic/beginner material.

Monday, September 26th - Introduction / Single Subject Analysis / ROI Analysis

Time	Title	Type	Lecturer
8:30 - 9:00	** Intro to Linux for FreeSurfer Users	talk/demo	Zeke Kaufman
9:00 - 9:15	** Intro to FreeSurfer Jargon	talk	Allison Stevens & Lilla Zollei
9:15 - 9:30	break
9:30 - 10:00	Introduction to Freesurfer	talk	Bruce Fischl
10:00 - 11:10	Analyzing the Individual Subject	talk	Doug Greve
11:10 - 11:30	break
11:30 - 11:45	Freeview demonstration	demo	Allison Moreau
11:45 - 12:15	Interaction with Individual Subject Data Tutorial	tutorial	staff
12:15 - 1:15	Lunch (Suggestions for where to eat)	--	--
1:15 - 1:45	Interaction with Individual Subject Data Tutorial	tutorial	staff
1:45 - 2:15	Surface-based Analysis: Intersubject Registration & Smoothing	talk	Doug Greve
2:15 - 2:35	break
2:35 - 3:05	ROI Analysis	talk	Doug Greve
3:05 - 3:55	ROI Analysis Tutorial	tutorial	staff
3:55 - 4:25	** A Non-physicist's Intro to MR (SpinBench)	talk	Dylan Tisdall
4:25 - 4:55	* MRI Acquisition Methods	talk	Andre van der Kouwe
6:15 - ?	Boston Beer Works	social activity	staff

Answers to online questions here

Boston Beer Works location information here and here.
Meet us in front of Building 149 to catch the 6:15pm shuttle bus (it leaves on time!).
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street.
Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that).

Tuesday, September 27th - Group Analysis / Longitudinal Analysis / Multimodal Analysis

Time	Title	Type	Lecturer
9:00 - 9:30	** Basics of Group Analysis	talk	Emily Lindemer
9:30 - 10:10	Group Analysis	talk	Emily Lindemer
10:10 - 10:30	break
10:30 - 11:10	Group Analysis Tutorial	tutorial	staff
11:10 - 11:30	Multiple Comparisons	talk	Emily Lindemer
11:30 - 11:50	Multiple Comparisons Tutorial	tutorial	staff
11:50 - 12:50	Lunch	--	--
12:50 - 1:10	QDEC demonstration	demo	Martin Reuter
1:10 - 1:50	QDEC Tutorial	tutorial	staff
1:50 - 2:35	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
2:35 - 2:55	break
2:55 - 3:35	Longitudinal Tutorial	tutorial	staff
3:35 - 4:05	Multi-Modal Integration, Part 1	talk	Lilla Zollei
4:05 - 4:30	Multi-Modal Integration Tutorial: Multimodal Registration	tutorial	staff
4:30 - 5:10	* An Overview of Registration Methods	talk	Lilla Zollei

Answers to online questions here

Wednesday, September 28th - Diffusion Analysis / fMRI Analysis

Time	Title	Type	Lecturer
9:00 - 9:15	** A Non-Physicist's Intro to Diffusion MRI Physics	talk	Dylan Tisdall
9:15 - 10:00	Introduction to Diffusion MRI	talk	Anastasia Yendiki
10:00 - 10:40	Diffusion Processing Tutorial	tutorial	staff
10:40 - 11:00	break
11:00 - 11:40	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
11:40 - 12:00	Tracula Tutorial	tutorial	staff
12:00 - 1:00	Lunch	--	--
1:00 - 1:30	Tracula Tutorial	tutorial	staff
1:30 - 1:40	Longitudinal TRACULA	talk	Anastasia Yendiki
1:40 - 1:55	break
1:55 - 2:55	Basics of fMRI Analysis	talk	Jon Polimeni
2:55 - 3:35	FSFAST	talk	Doug Greve
3:35 - 3:50	break
3:50 - 4:30	FSFAST	talk	Doug Greve
4:30 - 5:30	FSFAST Tutorial	tutorial	staff

Answers to online questions here

Thursday, September 29th - Multimodal Analysis / Troubleshooting / Future Directions

Time	Title	Type	Lecturer
8:30 - 9:00	* Motion-compensated Neuroanatomical Imaging	talk	Dylan Tisdall
9:00 - 9:30	Multi-Modal Integration, Part 2	talk	Doug Greve
9:30 - 10:00	Multi-Modal Integration Tutorial: fMRI Integration & Surface-based Group fMRI Analysis	tutorial	staff
10:00 - 10:30	FreeSurfer Troubleshooting	talk	Bruce Fischl
10:30 - 11:00	break & Evaluation
11:00 - 12:00	Troubleshooting Tutorial	tutorial	staff
12:00 - 1:00	Lunch	--	--
1:00 - 2:00	Quality Checking a Recon	demo	Allison Moreau
2:00 - 2:50	Future Directions	talk	Bruce Fischl
2:50 - 3:00	Question & Answer session	--	staff

Answers to online questions here

FsTutorial/Sept2016CourseSchedule (last edited 2017-09-26 11:31:11 by MorganFogarty)

-  ⇤ ← Revision 3 as of 2016-09-12 17:21:36 → 
  Size: 8976
  Editor: AllisonMoreau
  Comment: changed Boston Beer Works night to Tuesday (Bruins game on Monday)
+   ← Revision 7 as of 2016-09-19 15:00:27 → ⇥
  Size: 9194
  Editor: AllisonStevens
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 6:
-* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the !FreeSurfer processing stream. <<BR>> ** Indicates an optional talk covering basic/beginner material.
+* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the !FreeSurfer processing stream. <<BR>>
** Indicates an optional talk covering basic/beginner material.
-Line 10:
+Line 11:
-||8:30 - 9:00 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Unix_tutorial_zjk.pdf|Intro to Linux for FreeSurfer Users]] ||talk/tutorial ||Zeke Kaufman ||
+||8:30 - 9:00 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Unix_tutorial_zjk.pdf|Intro to Linux for FreeSurfer Users]] || talk/demo ||Zeke Kaufman ||
-Line 12:
+Line 13:
-||9:15 - 9:45 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Sep_2015_MRI_Basics.pdf|A Non-physicist's Intro to MR]] ([[http://www.heartvista.com/SpinBench|SpinBench]])'' '' ||talk ||Dylan Tisdall ||
||9:45 - 10:00 ||'''break''' || || ||
||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||
||10:30 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
||11:40 - 12:00 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Allison Moreau ||
||12:00 - 1:00 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|(Suggestions for where to eat)]] ||-- ||-- ||
||1:00 - 2:00 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||2:00 - 2:30 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods]] ||talk ||Andre van der Kouwe ||
||2:30 - 2:50 ||'''break''' || || ||
||2:50 - 3:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Registration & Smoothing]] ||talk ||Doug Greve ||
||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve ||
||3:50 - 4:40 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
+||9:15 - 9:30 ||'''break''' || || ||
||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||
||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
||11:10 - 11:30 ||'''break''' || || ||
||11:30 - 11:45 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Allison Moreau ||
||11:45 - 12:15 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||12:15 - 1:15 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|(Suggestions for where to eat)]] ||-- ||-- ||
||1:15 - 1:45 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||1:45 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Registration & Smoothing]] ||talk ||Doug Greve ||
||2:15 - 2:35 ||'''break''' || || ||
||2:35 - 3:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve ||
||3:05 - 3:55 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:55 - 4:25 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Sep_2015_MRI_Basics.pdf|A Non-physicist's Intro to MR]] ([[http://www.heartvista.com/SpinBench|SpinBench]])'' '' ||talk ||Dylan Tisdall ||
||4:25 - 4:55 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods]] ||talk ||Andre van der Kouwe ||
||6:15 - ? ||Boston Beer Works ||social activity ||staff ||
-Line 28:
+Line 32:
+'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<<BR>> Meet us in front of [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Building 149]] to catch the 6:15pm shuttle bus (it leaves on time!). <<BR>> If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. <<BR>>Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that).
-Line 47:
+Line 51:
-||6:15 - ?||Boston Beer Works||social activity||everyone||
-Line 51:
+Line 54:
-'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<<BR>> Meet us in front of [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Building 149]] to catch the 6:15pm shuttle bus (it leaves on time!). <<BR>> If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. <<BR>>Boston  Beer Works will be down that street, on your right. (Shuttles depart  every 15 minutes up until 7:15pm and every half hour after that).
-Line 73:
+Line 74:
 Line 80:
-||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part2.ppt|Multi-Modal Integration, Part 2]] ||talk ||Doug Greve ||
+||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part2.ppt|Multi-Modal Integration, Part 2]] ||talk || Doug Greve ||
 Line 83:
-||10:30 - 11:00 ||'''break''' & [[http://goo.gl/forms/xyGk2iJbp1|Evaluation]] || ||
+||10:30 - 11:00 ||'''break''' & [[http://goo.gl/forms/xyGk2iJbp1|Evaluation]]  || ||