Diff for "FsTutorial/Spring2019CourseSchedule"

Differences between revisions 33 and 49 (spanning 16 versions)

FreeSurfer Course, April 1-4, 2019

Our awesome FreeSurfer shirts can be purchased here.

8:00 - 9:30am Registration Desk Open

* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk that covers basic/beginner material.
*** Indicates optional extra time to work on tutorials and/or ask questions about your own data.

Monday, April 1st - Introduction / Single Subject Analysis / ROI Analysis

Time	Title	Type	Lecturer
8:30 - 9:00	** Intro to Linux for FreeSurfer Users	talk/demo	Andrew Hoopes
9:00 - 9:15	** Intro to FreeSurfer Jargon	talk	Caroline Magnain
9:15 - 9:30	break
9:30 - 10:15	Introduction to Freesurfer	talk	Bruce Fischl
10:15 - 11:25	Analyzing the Individual Subject	talk	Doug Greve
11:25 - 11:45	break
11:45 - 12:00	Freeview demonstration	demo	Bram Diamond
12:00 - 12:30	Introduction to FreeSurfer Output	tutorial	staff
12:30 - 1:30	Lunch (Suggestions for where to eat)	--	--
1:30 - 1:45	Introduction to FreeSurfer Output	tutorial	staff
1:45 - 2:15	Surface-based Analysis: Intersubject Registration & Smoothing	talk	Iman Aganj
2:15 - 2:35	break
2:35 - 3:05	ROI Analysis	talk	Emma Boyd
3:05 - 3:50	ROI Analysis Tutorial	tutorial	staff
3:50 - 4:20	Structural & Functional Data Integration	talk	David Salat
4:20 - 4:50	Practice Working with Data	tutorial	staff

Answers to online questions here

Tuesday, April 2nd - Group Analysis / Longitudinal Analysis / Troubleshooting

Time	Title	Type	Lecturer
8:00 - 9:00	*** Optional session, extra support for structural processing and ROI analysis	--	Research Techs
9:00 - 9:50	Group Analysis	talk	Viviana Siless
9:50 - 10:30	Group Analysis Tutorial	tutorial	staff
10:30 - 10:50	break
10:50 - 11:30	Multiple Comparisons	talk	Doug Greve
11:30 - 12:00	Multiple Comparisons Tutorial	tutorial	staff
12:00 - 1:00	Lunch	--	--
1:00 - 1:45	FreeSurfer Troubleshooting	talk	Bruce Fischl
1:45 - 2:45	Troubleshooting Tutorial	tutorial	staff
2:45 - 3:05	break
3:05 - 4:05	Quality Checking a Recon	demo	Leah Morgan, Allison Stevens
4:05 - 4:50	Longitudinal FreeSurfer	talk	Malte Hoffmann
4:50 - 5:30	LongitudinalTutorial	tutorial	staff
5:30 - 7:30	Social Night in the atrium of Bldg. 149	Snacks and Beverages Served	you!

Answers to online questions here

Wednesday, April 3rd - Multimodal Analysis / Diffusion Analysis / fMRI Analysis / MR Acquisition

Time	Title	Type	Lecturer
8:00 - 9:00	*** Optional session, extra support for questions on longitudinal processing and working with pediatric data	--	Lilla Zöllei, other staff
9:00 - 9:30	** Intro to MR (SpinBench)	talk	Robert Frost
9:30 - 10:00	Multi-Modal Integration, Part 1: Registration	talk	Aina Frau-Pascual
10:00 - 10:30	Multi-Modal Integration Tutorial, Part 1	tutorial	staff
10:30 - 10:50	break
10:50 - 11:05	** Intro to Diffusion MRI Physics	talk	Robert Frost
11:05 - 11:45	Introduction to Diffusion MRI	talk	Anastasia Yendiki
11:45 - 12:30	Diffusion Processing Tutorial	tutorial	staff
12:30 - 1:30	Lunch	--	--
1:30 - 2:20	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
2:20 - 3:20	Tracula Tutorial	tutorial	staff
3:20 - 3:40	break
3:40 - 3:50	Longitudinal TRACULA	talk	Anastasia Yendiki
3:50 - 4:50	Basics of fMRI Analysis	talk	Jingyuan Chen
4:50 - 5:30	* Running FreeSurfer in the cloud with AWS batch	talk	Paul Wighton

Answers to online questions here

The FreeSurfer Evaluation is here!

Thursday, April 4th - fMRI Analysis / Multimodal Analysis / Future Directions

Time	Title	Type	Lecturer
8:00 - 9:00	*** Optional session, extra support for fMRI and Diffusion Questions	--	staff
9:00 - 9:30	FSFAST, Part 1: Preprocessing	talk	Doug Greve
9:30 - 10:00	FSFAST Tutorial, Part 1	tutorial	staff
10:00 - 10:20	break & Evaluation
10:20 - 11:20	FSFAST, Part 2: GLM Analysis	talk	Doug Greve
11:20 - 12:00	FSFAST Tutorial, Part 2	tutorial	staff
12:00 - 1:00	Lunch	--	--
1:00 - 1:30	* An Overview of Registration Methods	talk	Lilla Zöllei
1:30 - 1:45	Resting State fMRI	talk	Doug Greve
1:45 - 2:15	Multi-Modal Integration, Part 2: Group Analysis	talk	Doug Greve
2:15 - 3:00	Multi-Modal Integration Tutorial, Part 2	tutorial	staff
3:00 - 3:15	break
3:15 - 3:30	FreeSurfer vs. VBM	talk	Doug Greve
3:30 - 4:30	Future Directions	talk	FS Development Team
4:30 - 5:00	Question & Answer Session	--	staff

Answers to online questions here

* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk covering basic/beginner material. *** Optional sessions are a time where you can work on finishing tutorials / work on your own data / ask basic questions in the presence of a few staff members

FsTutorial/Spring2019CourseSchedule (last edited 2019-09-17 12:53:10 by DougGreve)

-  ⇤ ← Revision 33 as of 2019-03-25 14:43:29 → 
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+   ← Revision 49 as of 2019-04-04 09:31:49 → ⇥
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-Deletions are marked like this.
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-* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the !FreeSurfer processing stream. <<BR>> ** Indicates an optional talk that covers basic/beginner material. <<BR>> *** Indicates extra time to work on tutorials and/or ask questions about your own data.
+* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the !FreeSurfer processing stream. <<BR>> ** Indicates an optional talk that covers basic/beginner material. <<BR>> *** Indicates optional extra time to work on tutorials and/or ask questions about your own data.
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-||9:30 - 10:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.for_wiki.oct.2018.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||
+||9:30 - 10:15 ||[[attachment:freesurfer.intro.apr.2019.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||
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-||3:50 - 4:20 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer-struct-func04022018-handout.pdf| Structural & Functional Data Integration]] ||talk ||David Salat ||
+||3:50 - 4:20 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer-struct-func04022018-handoutb.pdf| Structural & Functional Data Integration]] ||talk ||David Salat ||
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-||8:00 - 9:00 ||*** Optional time to work on tutorials / work on your own data / ask basic questions ||-- || Morgan Fogarty, Leah Morgan ||
+||8:00 - 9:00 ||*** Optional session, extra support for structural processing and ROI analysis||-- || Research Techs ||
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-||1:00 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.troubleshooting.ppt|FreeSurfer Troubleshooting]] ||talk ||Bruce Fischl ||
+||1:00 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.troubleshooting.apr2019.ppt|FreeSurfer Troubleshooting]] ||talk ||Bruce Fischl ||
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-||3:05 - 4:05 ||[[https://youtu.be/AR83_Bt04VQ|Quality Checking a Recon]] ||demo ||Leah Morgan||
+||3:05 - 4:05 ||[[https://youtu.be/AR83_Bt04VQ|Quality Checking a Recon]] ||demo ||Leah Morgan, Allison Stevens||
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-||5:30 - 6:15 ||*** Optional time to work on tutorials / work on your own data / ask basic questions ||-- || staff||
||6:30 - ? ||Social Night, either at Boston Beer Works of Bldg. 149 ||social activity ||you! ||
+##||5:30 - 6:15 ||*** Optional time to work on tutorials / work on your own data / ask basic questions ||-- || staff||
||5:30 - 7:30 ||Social Night in the atrium of Bldg. 149|| Snacks and Beverages Served ||you! ||
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-'''Boston Beer Works location information [[https://www.beerworks.net/locations-hours|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<<BR>> Meet us in front of [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Building 149]] to catch the 6:30pm shuttle bus (it leaves on time!). <<BR>> If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. <<BR>>Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that).
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-||8:00 - 9:00 ||*** Optional time to work on tutorials / work on your own data / ask basic questions ||-- ||Leah Morgan, Lilla Zollei||
||9:00 - 9:30 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/IntroMRI.pptx|Intro to MR]] ([[http://www.heartvista.com/SpinBench|SpinBench]])'' '' ||talk ||Robert Frost ||
+||8:00 - 9:00 ||*** Optional session, extra support for questions on longitudinal processing and working with pediatric data ||-- ||Lilla Zöllei, other staff||
||9:00 - 9:30 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/IntroMRI.apr2019.pptx|Intro to MR]] ([[http://www.heartvista.com/SpinBench|SpinBench]])'' '' ||talk ||Robert Frost ||
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-||10:50 - 11:05 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/IntroDiffusion.pptx|Intro to Diffusion MRI Physics]] '' '' ||talk ||Robert Frost ||
+||10:50 - 11:05 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/IntroDiffusion.apr2019.pptx|Intro to Diffusion MRI Physics]] '' '' ||talk ||Robert Frost ||
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-||4:50 - 5:30 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs-cloud-presentation.ppt|Running FreeSurfer in the cloud with AWS batch]] || talk || Paul Wighton||
+||4:50 - 5:30 ||* [[attachment:fs-cloud-prsentation_20190403.pdf|Running FreeSurfer in the cloud with AWS batch]] || talk || Paul Wighton||
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+Line 86:
-##'''The !FreeSurfer Evaluation is [[ https://goo.gl/forms/o1D4r3j2Q3vEvOOD2|here]]!'''
+'''The !FreeSurfer Evaluation is [[ https://forms.gle/HmxDSXMopTdNMJKu7|here]]!'''
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-||8:00 - 9:00 ||*** Optional time to work on tutorials / work on your own data / ask basic questions ||-- ||Leah Morgan||
+||8:00 - 9:00 ||*** Optional session, extra support for fMRI and Diffusion Questions ||-- ||staff||
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-||10:00 - 10:20 ||'''break''' & [[https://goo.gl/forms/AGh3kKXH14E86yeF2|Evaluation]] || || ||
+||10:00 - 10:20 ||'''break''' & Evaluation || || ||
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+Line 102:
-||3:15 - 3:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.vbm.ppt|FreeSurfer vs. VBM]] ||talk ||Doug Greve ||
||3:45 - 4:30 ||Future Directions ||talk || FS Development Team ||
+||3:15 - 3:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.vbm.ppt|FreeSurfer vs. VBM]] ||talk ||Doug Greve ||
||3:30 - 4:30 ||Future Directions ||talk || FS Development Team ||
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-* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the !FreeSurfer processing stream. <<BR>> ** Indicates an optional talk covering basic/beginner material.
+* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the !FreeSurfer processing stream. <<BR>> ** Indicates an optional talk covering basic/beginner material. *** Optional sessions are a time where you can work on finishing tutorials / work on your own data / ask basic questions in the presence of a few staff members