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| Describe GrahamWideman here. | = GrahamWideman pages = |
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| Just a test. | == Useful pages == |
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| Emphasis: ''italics''; '''bold'''; '''''bold italics'''''; ''mixed '''bold''' and italics''; ---- horizontal rule. Headings: = Title 1 =; == Title 2 ==; === Title 3 ===; ==== Title 4 ====; ===== Title 5 =====. Lists: space and one of * bullets; 1., a., A., i., I. numbered items; 1.#n start numbering at n; space alone indents. Links: JoinCapitalizedWords; ["brackets and double quotes"]; url; [url]; [url label]. Tables: || cell text |||| cell text spanning two columns ||; no trailing white space allowed after tables or titles. ---- CategoryCategory |
||<#D0D0D0>'''Link'''||<#D0D0D0>'''Description'''|| ||'''Concepts'''|| || ||<^>ReconAllFilesVsSteps||Cross-reference table showing files read and written by each step in recon-all|| ||<^>LabelsClutsAnnotationFiles||Article on '''labels''', '''colortables''' and '''annotations''' || ||<^>RegTemplateParcAtlas ||Overview: [[BR]] --Creating and using '''"tif" templates''' for spherical registration of surfaces[[BR]] --Creating and using '''GCA atlas files''' for parcellation|| ||<^>TemplateTifImageFiles||Discussion of the contents and format of the so-called "Image" file format used to store !FreeSurfer surface-registration template data.|| || || || ||<#D0D0D0>'''Scripts'''||<#D0D0D0> || ||<^>QaImageScripts||Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA || || || || ||<#D0D0D0>'''Commands'''||<#D0D0D0>(... for which I wrote some documentation) || ||<^>["mris_curvature_stats"] ||Curvature-related statistics || ||<^>["mris_label2annot"] ||Combine label files plus colortable into an annotation file || ||<^>["mri_annotation2label"]||Extract label file from annotation file || ||<^>["mris_make_template"]||Use data from multiple subjects to create a surface registration template file || ||<^>["mri_make_template"]||Use data from multiple subjects to create a volume registration template || ||<^>["mris_register"]||For one subject, register to a registration template (usually resulting in ?h.sphere.reg) || ||<^>["mrisp_paint"]||"Paint" data from a template file "onto a given surface". Allows viewing data from a template file.|| || || || ||<#D0D0D0>'''Wiki'''||<#D0D0D0> || ||<^>WikiInsertImage||Distilled instructions on how to insert an image on a wiki page|| || || || == Test Pages == * GrahamWideman * GrahamWideman/MoinEditorBackup * GrahamWidemanTest01 * GrahamWidemanTest02 * GrWiAccessControlTest * GrWiTestNewPage |
GrahamWideman pages
Useful pages
Link |
Description |
Concepts |
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Cross-reference table showing files read and written by each step in recon-all |
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Article on labels, colortables and annotations |
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Overview: BR --Creating and using "tif" templates for spherical registration of surfacesBR --Creating and using GCA atlas files for parcellation |
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Discussion of the contents and format of the so-called "Image" file format used to store FreeSurfer surface-registration template data. |
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Scripts |
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Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA |
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Commands |
(... for which I wrote some documentation) |
["mris_curvature_stats"] |
Curvature-related statistics |
["mris_label2annot"] |
Combine label files plus colortable into an annotation file |
["mri_annotation2label"] |
Extract label file from annotation file |
["mris_make_template"] |
Use data from multiple subjects to create a surface registration template file |
["mri_make_template"] |
Use data from multiple subjects to create a volume registration template |
["mris_register"] |
For one subject, register to a registration template (usually resulting in ?h.sphere.reg) |
["mrisp_paint"] |
"Paint" data from a template file "onto a given surface". Allows viewing data from a template file. |
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Wiki |
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Distilled instructions on how to insert an image on a wiki page |
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