|
Size: 623
Comment:
|
Size: 2563
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| Describe GrahamWideman here. | = GrahamWideman pages = |
| Line 3: | Line 3: |
| Just a test. | == Useful pages == |
| Line 5: | Line 5: |
| Emphasis: ''italics''; '''bold'''; '''''bold italics'''''; ''mixed '''bold''' and italics''; ---- horizontal rule. Headings: = Title 1 =; == Title 2 ==; === Title 3 ===; ==== Title 4 ====; ===== Title 5 =====. Lists: space and one of * bullets; 1., a., A., i., I. numbered items; 1.#n start numbering at n; space alone indents. Links: JoinCapitalizedWords; ["brackets and double quotes"]; url; [url]; [url label]. Tables: || cell text |||| cell text spanning two columns ||; no trailing white space allowed after tables or titles. ---- CategoryCategory |
||<#D0D0D0>'''Link'''||<#D0D0D0>'''Description'''|| || || || ||<-2#D0D0D0>'''Concepts'''|| ||<^>ReconAllFilesVsSteps||Cross-reference table showing files read and written by each step in recon-all|| ||<^>LabelsClutsAnnotationFiles||Article on '''labels''', '''colortables''' and '''annotations''' || ||<^>["tksurfer_labeledit"] ||Editing labels/annotations in tksurfer|| ||<^>SurfaceRegAndTemplates ||Creating and using '''"tif" templates''' for spherical registration of surfaces|| ||<^>SurfaceLabelAtlas ||Creating and using '''GCA atlas files''' for parcellation|| ||<^>TemplateTifImageFiles||Discussion of the contents and format of the so-called "Image" file format used to store !FreeSurfer surface-registration template data.|| || || || ||<-2#D0D0D0>'''Scripts'''|| ||<^>QaImageScripts||Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA || || || || ||<-2#D0D0D0>'''Programs/Scripts''' (... for which I wrote some documentation) || ||<^>["tksurfer"] ||Freesurfer's surface-viewing application. (I completed the list of flagged arguments.)|| ||<^>["mris_curvature_stats"] ||Curvature-related statistics || ||<^>["mris_label2annot"] ||Combine label files plus colortable into an annotation file || ||<^>["mri_annotation2label"]||Extract label file from annotation file || ||<^>["mris_make_template"]||Use data from multiple subjects to create a surface registration template file || ||<^>["mri_make_template"]||Use data from multiple subjects to create a volume registration template || ||<^>["mris_register"]||For one subject, register to a registration template (usually resulting in ?h.sphere.reg) || ||<^>["mrisp_paint"]||"Paint" data from a template file "onto a given surface". Allows viewing data from a template file.|| || || || ||<-2#D0D0D0>'''Source code suggestions'''|| ||<^>["gwcode_tksurfer_delink"]||Code relating to -delink|| ||<^>["gwcode_tksurfer_labelresize"]||Code to allow the tool window's per-vertex data fields to expand on window resize|| || || || || || || ||<-2#D0D0D0>'''Issues'''|| ||<^>["gwissue_labeledit"]||Issues regarding the tksurfer functionality relating to creating and editing labels and annotations|| || || || ||<-2#D0D0D0>'''Wiki'''|| ||<^>WikiInsertImage||Distilled instructions on how to insert an image on a wiki page|| || || || == Test Pages == * GrahamWideman * GrahamWideman/MoinEditorBackup * GrahamWidemanTest01 * GrahamWidemanTest02 * GrWiAccessControlTest * GrWiTestNewPage |
GrahamWideman pages
Useful pages
Link |
Description |
|
|
Concepts |
|
Cross-reference table showing files read and written by each step in recon-all |
|
Article on labels, colortables and annotations |
|
["tksurfer_labeledit"] |
Editing labels/annotations in tksurfer |
Creating and using "tif" templates for spherical registration of surfaces |
|
Creating and using GCA atlas files for parcellation |
|
Discussion of the contents and format of the so-called "Image" file format used to store FreeSurfer surface-registration template data. |
|
|
|
Scripts |
|
Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA |
|
|
|
Programs/Scripts (... for which I wrote some documentation) |
|
["tksurfer"] |
Freesurfer's surface-viewing application. (I completed the list of flagged arguments.) |
["mris_curvature_stats"] |
Curvature-related statistics |
["mris_label2annot"] |
Combine label files plus colortable into an annotation file |
["mri_annotation2label"] |
Extract label file from annotation file |
["mris_make_template"] |
Use data from multiple subjects to create a surface registration template file |
["mri_make_template"] |
Use data from multiple subjects to create a volume registration template |
["mris_register"] |
For one subject, register to a registration template (usually resulting in ?h.sphere.reg) |
["mrisp_paint"] |
"Paint" data from a template file "onto a given surface". Allows viewing data from a template file. |
|
|
Source code suggestions |
|
["gwcode_tksurfer_delink"] |
Code relating to -delink |
["gwcode_tksurfer_labelresize"] |
Code to allow the tool window's per-vertex data fields to expand on window resize |
|
|
|
|
Issues |
|
["gwissue_labeledit"] |
Issues regarding the tksurfer functionality relating to creating and editing labels and annotations |
|
|
Wiki |
|
Distilled instructions on how to insert an image on a wiki page |
|
|
|