|
Size: 142
Comment:
|
Size: 866
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 3: | Line 3: |
| = FreeSurfer Subcortical Segmentation Work Flow = | = FreeSurfer Subcortical Segmentation = FreeSurfer now automatically runs automated labeling of the brain volume and this is included in all versions of the September 2005 FreeSurfer. Each voxel in the normalized brain volume is assigned one of about 40 labels, including: Cerebral White Matter, Cerebral Cortex, Lateral Ventricle, Inferior Lateral Ventricle, Cerebellum White Matter, Cerebellum Cortex, Thalamus, Caudate, Putamen, Pallidum, Hippocampus, Amygdala, Lesion, Accumbens area, Vessel, Central Diencephalon Third Ventricle, Fourth Ventricle, Brain Stem, Cerebrospinal Fluid However, if you processed your anatomical data using previous versions, you can just run the subcortical segmentation separately if you wish to obtain the automated labels. |
| Line 6: | Line 13: |
[wiki:FreeSurferWorkFlows top] | [wiki:HistoricalReconstruction previous]
FreeSurfer Subcortical Segmentation
FreeSurfer now automatically runs automated labeling of the brain volume and this is included in all versions of the September 2005 FreeSurfer. Each voxel in the normalized brain volume is assigned one of about 40 labels, including:
Cerebral White Matter, Cerebral Cortex, Lateral Ventricle, Inferior Lateral Ventricle, Cerebellum White Matter, Cerebellum Cortex, Thalamus, Caudate, Putamen, Pallidum, Hippocampus, Amygdala, Lesion, Accumbens area, Vessel, Central Diencephalon Third Ventricle, Fourth Ventricle, Brain Stem, Cerebrospinal Fluid
However, if you processed your anatomical data using previous versions, you can just run the subcortical segmentation separately if you wish to obtain the automated labels.