Differences between revisions 33 and 34

FreeSurfer Tutorials

The FreeSurfer tutorials provided below are designed to give users an introduction to using FreeSurfer, as well get you acquainted with the concepts needed to perform its various modes of MRI data analysis and image processing. The tutorials are designed to be followed along in a terminal window, where commands can be copy/pasted into the terminal window instead of typed. In order to run any of the freesurfer tutorials you must have valid freesurfer installation on your machine, and a local copy of the tutorial data. Be sure to set the TUTORIAL_DATA environment variable properly as specified on the tutorial data page.

Basics:

Intro to FreeSurfer Output
Troubleshooting FreeSurfer Output (slides, video)
Group Analysis via command-line (slides, video)
Group Analysis via GUI
ROI Analysis ( slides, video)
Multimodal Analysis

Specialized topics:

Longitudinal Processing, Edits and Post-Processing (slides, video)
Diffusion Analysis Diffusion and DTI Integration (slides, video)
Tracula Analysis
FS-Fast, fMRI Analysis
FSL-FreeSurfer integration

Old versions of tutorials which use tkmedit or tksurfer (no longer updated as of May 2014):

Intro to FreeSurfer Output
Group Analysis via command-line
Group Analysis via GUI
ROI Analysis
Multimodal Analysis
Longitudinal Processing, Edits and Post-Processing

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- * [[FsTutorial/Diffusion|Diffusion Analysis]]
+ * [[FsTutorial/Diffusion|Diffusion Analysis]] [[FsTutorial/Diffusion_DtiIntegration| Diffusion and DTI Integration]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|slides]], [[https://www.youtube.com/watch?v=BKjBdeWYllk|video]])