Name

mri_nl_align - pairwise non-linear warp between two 3D volumes

Synopsis

mri_nl_align <source> <destination> <warp> [-view x y z] [-w k] [-z ] [-sigma ] [-dt ] [-intensity l_log_likelihood] [-T initial transformation]

<source>	FIXED volume	volume to which the second argument gets warped
<target>	MOVING volume	volume that gets warped to thefirst argument
<warp>	registration output	the warp that aligns the moving volume to the fixed one

-view x y z	brief description	detailed description (eg, help file information)
-w k	write iterations	write an mgz volume and 3 orthogonal views (.tif) at each k^th iteration
-z	disabling zero image locations
-sigma
-dt
-intensity l_log_likelihood
-T transform	initial transformation

<warp>

the resulting non-linear registration warp

Non-linear volumetric registration between two input volumes. Suited to align mono-modal images as the objective function is SSE.

command foo -i f -o out

description

command foo -i f -o out -f fvalue

description

None

description
description