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| USAGE: mri_concat | '''Index''' <<TableOfContents>> |
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| --i invol <--i invol ...> (don't need --i) --o out |
= Name = mri_concat |
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| --paired-diff : compute paired diff (1-2, 3-4, etc) --paired-diff-norm : same as paired-diff but scale by TP1,2 average --paired-diff-norm1 : same as paired-diff but scale by TP1 --paired-diff-norm2 : same as paired-diff but scale by TP2 --mean : compute mean of concatenated volumes |
= Description = Concatenates input data sets. |
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| --help print out information on how to use this program --version print out version and exit |
= Synopsis = mri_concat.bin |
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| Concatenates input data sets. EXAMPLES: mri_concat --i f1.mgh --i f2.mgh --o cout.mgh mri_concat f1.mgh f2.mgh --o cout.mgh mri_concat f*.mgh --o cout.mgh mri_concat f*.mgh --o coutmn.mgh --mean mri_concat f*.mgh --o coutdiff.mgh --paired-diff mri_concat f*.mgh --o coutdiff.mgh --paired-diff-norm mri_concat f*.mgh --o coutdiff.mgh --paired-diff-norm1 |
= Arguments = |
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| == Optional Flagged Arguments == || --o out || Output || || --i invol || Input || || --f listfile || List file has a text list of files (up to 40000)|| || --paired-sum || Computes paired sum (1+2, 3d+4, ect.) || || --paired-avg || Computes paired average (1+2, 3d+4, ect.) || || --paired-diff || Computes paired difference (1-2, 3d-4, ect.) || || --paired-diff-norm || Same as paired difference but scale by TP1, 2 average || || --paired-diff-norm1 || Same as paired difference but scale by TP1 || || --paired-diff-norm2 || Same as paired difference but scale by TP2 || || --norm-mean || Normalize frames by mean of all TP || || --norm1 || Normalize frames by TP1 || || --mtx matrix.asc || Multiply by matrix in ascii file || || --gmean Ng || = Examples = == Example 1 == = See Also = = Reporting Bugs = Report bugs to freesurfer@nmr.mgh.harvard.edu |
Index
Contents
Name
mri_concat
Description
Concatenates input data sets.
Synopsis
mri_concat.bin
Arguments
Optional Flagged Arguments
--o out |
Output |
--i invol |
Input |
--f listfile |
List file has a text list of files (up to 40000) |
--paired-sum |
Computes paired sum (1+2, 3d+4, ect.) |
--paired-avg |
Computes paired average (1+2, 3d+4, ect.) |
--paired-diff |
Computes paired difference (1-2, 3d-4, ect.) |
|| --paired-diff-norm || Same as paired difference but scale by TP1, 2 average ||
--paired-diff-norm1 |
Same as paired difference but scale by TP1 |
--paired-diff-norm2 |
Same as paired difference but scale by TP2 |
--norm-mean |
Normalize frames by mean of all TP |
--norm1 |
Normalize frames by TP1 |
--mtx matrix.asc |
Multiply by matrix in ascii file |
|| --gmean Ng ||
Examples
Example 1
See Also
Reporting Bugs
Report bugs to freesurfer@nmr.mgh.harvard.edu