Index

Software version described:

Name

mri_make_template

Overview

Reads data from two or more subjects and creates a template file for volumes. (as opposed to mris_make_template which makes a template for registering surfaces.)

Synopsis

mri_make_template [Flagged args] subject1 [subject2...] ouput_template_path

Arguments

Positional Arguments

Posn

<Argname>

Description

1 to last-1

<subject>

List of one or more subjects to input

last

<Out_fname>

Full path to output template file.

Required Flagged Arguments

None

Optional Flagged Arguments

Category

Flag

<Args>

Description

Input

-open

<open>

Open input volume {open} times

Input

-sdir

<subjects_dir>

Sets SUBJECTS_DIR instead of default

Input

-T1

<T1_name>

Reads T1 volume from directory T1_name. (Or file, presumably?)

Output

-B

<binary_name>

Generates binary template from {binary_name} volume

Output

-novar

Disables writing of variance estimates

Output

-S,-V

<var_fname>

Writes variances

Output

-statsonly

Output

-X

<xform_mean_fname, xform_covariance_fname>

Writes means and covariances of xforms

Algorithm

-binarize

<binarize (int)>

Binarizes input volume with thresh= binarize

Algorithm

-erode

<erode>

Erodes input volume {erode} times

Algorithm

-N

Don't use transform on first volume

Algorithm

-smooth

<smooth (float)>

Smooths output with Gaussian sigma= smooth

Algorithm

-T

<transform_fname>

Applies transformation {transform_fname} to each volume

Utility

-?,-U

Print usage

Footer

XXXXXXXXXXXXX

Outputs

output

??

Description

Not sure what kind of template this produces, nor what registration is expected upstream from the is program. --GW

Examples

Example 1

??

description

Example 2

command foo -i f -o out -f fvalue

description

Bugs

None

See Also

mris_make_template

Links

FreeSurfer, FsFast

Methods Description

??

References

References/Lastname###

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Documentation Authors

BruceFischl, GrahamWideman

mri_make_template (last edited 2008-04-29 11:45:52 by localhost)