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| <<Navigation(children)>> '''Index''' <<TableOfContents>> Software version described: * $Date: 2006/12/29 02:09:07 $ * $Revision: 1.25 $ * Use usage or version option to see version you are using |
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| = Overview = Reads data from two or more subjects and creates a template file for volumes. (as opposed to [[mris_make_template]] which makes a template for registering surfaces.) |
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| mri_make_template <subject> <subject> ... <output volume> | mri_make_template [Flagged args] subject1 [subject2...] ouput_template_path |
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| = Positional Arguments = || subject || description || || output volume || description || |
= Arguments = == Positional Arguments == ||<^>'''Posn'''||<^> <'''Argname'''> ||<^>'''Description'''|| ||<^>1 to last-1||<^> <subject> ||<^>List of one or more subjects to input|| ||<^>last||<^> <Out_fname> ||<^>Full path to output template file.|| |
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| = Required Flagged Arguments = || none listed || |
== Required Flagged Arguments == None |
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| = Optional Flagged Arguments = || none listed || |
== Optional Flagged Arguments == ||<^>'''Category'''||<^>'''Flag'''||<^> <'''Args'''> ||<^>'''Description'''|| ||<^>Input||<^>-open||<^> <open> ||<^>Open input volume {open} times|| ||<^>Input||<^>-sdir||<^> <subjects_dir> ||<^>Sets SUBJECTS_DIR instead of default|| ||<^>Input||<^>-T1||<^> <T1_name> ||<^>Reads T1 volume from directory T1_name. (Or file, presumably?)|| ||<^>Output||<^>-B||<^> <binary_name> ||<^>Generates binary template from {binary_name} volume|| ||<^>Output||<^>-novar||<^> ||<^>Disables writing of variance estimates|| ||<^>Output||<^>-S,-V||<^> <var_fname> ||<^>Writes variances|| ||<^>Output||<^>-statsonly||<^> ||<^>|| ||<^>Output||<^>-X||<^> <xform_mean_fname, xform_covariance_fname> ||<^>Writes means and covariances of xforms|| ||<^>Algorithm||<^>-binarize||<^> <binarize (int)> ||<^>Binarizes input volume with thresh= binarize|| ||<^>Algorithm||<^>-erode||<^> <erode> ||<^>Erodes input volume {erode} times|| ||<^>Algorithm||<^>-N||<^> ||<^>Don't use transform on first volume|| ||<^>Algorithm||<^>-smooth||<^> <smooth (float)> ||<^>Smooths output with Gaussian sigma= smooth|| ||<^>Algorithm||<^>-T||<^> <transform_fname> ||<^>Applies transformation {transform_fname} to each volume|| ||<^>Utility||<^>-?,-U||<^> ||<^>Print usage|| ||<^>Footer||<^>XXXXXXXXXXXXX||<^> ||<^>|| |
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| || volume1 || description || | || output || ?? || |
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| description | Not sure what kind of template this produces, nor what registration is expected upstream from the is program. --GW |
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| command foo -i f -o out | ?? |
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| ["othercommand1"], ["othercommand2"] | [[mris_make_template]] |
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| description description |
?? |
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| ["References/Lastname###"] | [[References/Lastname###]] |
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| = Author/s = JaneSmith |
= Documentation Authors = BruceFischl, GrahamWideman |
Index
Contents
Software version described:
- $Date: 2006/12/29 02:09:07 $
- $Revision: 1.25 $
- Use usage or version option to see version you are using
Name
mri_make_template
Overview
Reads data from two or more subjects and creates a template file for volumes. (as opposed to mris_make_template which makes a template for registering surfaces.)
Synopsis
mri_make_template [Flagged args] subject1 [subject2...] ouput_template_path
Arguments
Positional Arguments
Posn |
<Argname> |
Description |
1 to last-1 |
<subject> |
List of one or more subjects to input |
last |
<Out_fname> |
Full path to output template file. |
Required Flagged Arguments
None
Optional Flagged Arguments
Category |
Flag |
<Args> |
Description |
Input |
-open |
<open> |
Open input volume {open} times |
Input |
-sdir |
<subjects_dir> |
Sets SUBJECTS_DIR instead of default |
Input |
-T1 |
<T1_name> |
Reads T1 volume from directory T1_name. (Or file, presumably?) |
Output |
-B |
<binary_name> |
Generates binary template from {binary_name} volume |
Output |
-novar |
|
Disables writing of variance estimates |
Output |
-S,-V |
<var_fname> |
Writes variances |
Output |
-statsonly |
|
|
Output |
-X |
<xform_mean_fname, xform_covariance_fname> |
Writes means and covariances of xforms |
Algorithm |
-binarize |
<binarize (int)> |
Binarizes input volume with thresh= binarize |
Algorithm |
-erode |
<erode> |
Erodes input volume {erode} times |
Algorithm |
-N |
|
Don't use transform on first volume |
Algorithm |
-smooth |
<smooth (float)> |
Smooths output with Gaussian sigma= smooth |
Algorithm |
-T |
<transform_fname> |
Applies transformation {transform_fname} to each volume |
Utility |
-?,-U |
|
Print usage |
Footer |
XXXXXXXXXXXXX |
|
Outputs
output |
?? |
Description
Not sure what kind of template this produces, nor what registration is expected upstream from the is program. --GW
Examples
Example 1
??
description
Example 2
command foo -i f -o out -f fvalue
description
Bugs
None
See Also
Links
Methods Description
??
References
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>