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||<^>'''Category'''||<^>'''Flag'''||<^> <'''Args'''> ||<^>'''Description'''||
||<^>Input||<^>-open||<^> <open> ||<^>Open input volume {open} times||
||<^>Input||<^>-sdir||<^> <subjects_dir> ||<^>Sets SUBJECTS_DIR instead of default||
||<^>Input||<^>-T1||<^> <T1_name> ||<^>Reads T1 volume from directory T1_name. (Or file, presumably?)||
||<^>Output||<^>-B||<^> <binary_name> ||<^>Generates binary template from {binary_name} volume||
||<^>Output||<^>-novar||<^> ||<^>Disables writing of variance estimates||
||<^>Output||<^>-S,-V||<^> <var_fname> ||<^>Writes variances||
||<^>Output||<^>-statsonly||<^> ||<^>||
||<^>Output||<^>-X||<^> <xform_mean_fname, xform_covariance_fname> ||<^>Writes means and covariances of xforms||
||<^>Algorithm||<^>-binarize||<^> <binarize (int)> ||<^>Binarizes input volume with thresh= binarize||
||<^>Algorithm||<^>-erode||<^> <erode> ||<^>Erodes input volume {erode} times||
||<^>Algorithm||<^>-N||<^> ||<^>Don't use transform on first volume||
||<^>Algorithm||<^>-smooth||<^> <smooth (float)> ||<^>Smooths output with Gaussian sigma= smooth||
||<^>Algorithm||<^>-T||<^> <transform_fname> ||<^>Applies transformation {transform_fname} to each volume||
||<^>Utility||<^>-?,-U||<^> ||<^>Print usage||
||<^>Footer||<^>XXXXXXXXXXXXX||<^> ||<^>||

Navigation(children) Index TableOfContents

ARRRG -- just edited this page by mistake. In the process of restoring. Sorry! --GW 2008-01-21

Software version described:

  • $Date: 2006/12/29 02:09:07 $
  • $Revision: 1.25 $
  • Use usage or version option to see version you are using

Name

mri_make_template

Overview

Xxx

Synopsis

mri_make_template Xxxx

Arguments

Positional Arguments

Required Flagged Arguments

None

Optional Flagged Arguments

Category

Flag

<Args>

Description

Input

-open

<open>

Open input volume {open} times

Input

-sdir

<subjects_dir>

Sets SUBJECTS_DIR instead of default

Input

-T1

<T1_name>

Reads T1 volume from directory T1_name. (Or file, presumably?)

Output

-B

<binary_name>

Generates binary template from {binary_name} volume

Output

-novar

Disables writing of variance estimates

Output

-S,-V

<var_fname>

Writes variances

Output

-statsonly

Output

-X

<xform_mean_fname, xform_covariance_fname>

Writes means and covariances of xforms

Algorithm

-binarize

<binarize (int)>

Binarizes input volume with thresh= binarize

Algorithm

-erode

<erode>

Erodes input volume {erode} times

Algorithm

-N

Don't use transform on first volume

Algorithm

-smooth

<smooth (float)>

Smooths output with Gaussian sigma= smooth

Algorithm

-T

<transform_fname>

Applies transformation {transform_fname} to each volume

Utility

-?,-U

Print usage

Footer

XXXXXXXXXXXXX

Outputs

output

??

Description

??

Examples

Example 1

??

description

Example 2

command foo -i f -o out -f fvalue

description

Bugs

None

See Also

["mris_make_template"]

Links

FreeSurfer, FsFast

Methods Description

??

References

["References/Lastname###"]

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Documentation Authors

BruceFischl

mri_make_template (last edited 2008-04-29 11:45:52 by localhost)