Deletions are marked like this. | Additions are marked like this. |
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{{{mri_pretess [options] filledvol labelstring normvol newfilledvol -debug_voxel C R S -nocorners : no removal of corner configurations in addition to edge ones -w : turn on diagnostic writing -keep : keep WM edits -test : add a test voxel. Output will not be saved. -help : print help (duh) |
= mri_pretess = |
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filledvol is usually wm.mgz labelstring is usually wm normvol is usually norm.mgz newfilledvol is usually wm.mgz |
=== Usage: === {{{ mri_pretess [options] filledvol labelstring normvol newfilledvol }}} |
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=== Options: === {{{ -debug_voxel C R S -nocorners : no removal of corner configurations in addition to edge ones -w : turn on diagnostic writing -keep : keep WM edits |
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=== Required: === {{{ filledvol is usually wm.mgz labelstring is usually wm (127 for lh, 255 for rh) normvol is usually norm.mgz newfilledvol is usually wm.mgz }}} |
mri_pretess
Changes white matter (WM) segmentation so that the neighbors of all voxels labeled as WM have a face in common - no edges or corners allowed.
Usage:
mri_pretess [options] filledvol labelstring normvol newfilledvol
Options:
-debug_voxel C R S -nocorners : no removal of corner configurations in addition to edge ones -w : turn on diagnostic writing -keep : keep WM edits -test : adds a voxel that should be removed by mri_pretess. The value of the voxel is set to that of an ON-edited WM, so it should be kept with -keep. The output will NOT be saved.
Required:
filledvol is usually wm.mgz labelstring is usually wm (127 for lh, 255 for rh) normvol is usually norm.mgz newfilledvol is usually wm.mgz