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{{{mri_pretess [options] filledvol labelstring normvol newfilledvol

 -debug_voxel C R S
 -nocorners : no removal of corner configurations in addition to edge ones
 -w : turn on diagnostic writing
 -keep : keep WM edits
 -test : add a test voxel. Output will not be saved.
 -help : print help (duh)
= mri_pretess =
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  filledvol is usually wm.mgz
  labelstring is usually wm
  normvol is usually norm.mgz
  newfilledvol is usually wm.mgz
=== Usage: ===
{{{
mri_pretess [options] filledvol labelstring normvol newfilledvol
}}}
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=== Options: ===
{{{
 -debug_voxel C R S
 -nocorners : no removal of corner configurations in addition to edge ones
 -w : turn on diagnostic writing
 -keep : keep WM edits
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=== Required: ===
{{{
  filledvol is usually wm.mgz
  labelstring is usually wm (127 for lh, 255 for rh)
  normvol is usually norm.mgz
  newfilledvol is usually wm.mgz
}}}

mri_pretess

Changes white matter (WM) segmentation so that the neighbors of all voxels labeled as WM have a face in common - no edges or corners allowed.

Usage:

mri_pretess [options] filledvol labelstring normvol newfilledvol

Options:

 -debug_voxel C R S
 -nocorners : no removal of corner configurations in addition to edge ones
 -w : turn on diagnostic writing
 -keep : keep WM edits
 -test : adds a voxel that should be removed by mri_pretess.
  The value of the voxel is set to that of an ON-edited WM,
  so it should be kept with -keep. The output will NOT be saved.

Required:

  filledvol    is usually wm.mgz
  labelstring  is usually wm (127 for lh, 255 for rh)
  normvol      is usually norm.mgz
  newfilledvol is usually wm.mgz

mri_pretess (last edited 2008-04-29 11:46:17 by localhost)