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| ## see CommandTemplate and dtrecon as exmaples | ## See HelpOnCommandTemplate for description of formatting ## ## Note: If you are modifying this page please refer to the ## CommandTemplate page and confirm that this page has the latest ## CommandTemplate formatting <<Navigation(children)>> '''Index''' <<TableOfContents>> |
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| {{{ | |
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| }}} | |
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| {{{ mri_tessellate [<option>] [input volume] [label-value] [output surface] }}} |
mri_tessellate [options] <invol> <labelvalue> <outsurf> |
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| = Positional Arguments = {{{ [input volume] COR, .mgh, or .mgz volume |
= Arguments = == Positional Arguments == || <invol> || input volume || || <labelvalue> || integer, if input is filled volume, 127 is rh, 255 is lh || || <outsurf> || binary surface of the tessellation || |
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| [label-value] integer, if input is filled volume, 127 is rh, 255 is lh |
== Required Flagged Arguments == none |
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| [output surface] binary surface of the tessellation }}} = Optional Flagged Arguments = {{{ -a tessellate the surface of all voxels with different labels -n save surface with real RAS coordinates where c_(r,a,s) != 0 }}} |
== Optional Flagged Arguments == || -a || tessellate the surface of all voxels with different labels || || -n || save surface with real RAS coordinates where c_(r,a,s) != 0 || |
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| {{{ surface file, typically ?h.orig }}} = Example 1 = {{{ mri_tessellate $SUBJECTS_DIR/subjid/mri/filled 127 rh.orig }}} = Example 2 = {{{ mri_tessellate $SUBJECTS_DIR/subjid/mri/aseg 17 lh.hippocampus }}} = See Also = ["othercommand1"], ["othercommand2"] = Author = JaneSmith = Links = FreeSurfer, FsFast |
|| <outsurf> || surface file, typically ?h.orig || |
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| Note: the meaning of the labels can be found in $FREESURFER_HOME/FreeSurferColorLUT.txt = Examples = == Example 1 == mri_tessellate $SUBJECTS_DIR/subjid/mri/filled 127 rh.orig == Example 2 == mri_tessellate $SUBJECTS_DIR/subjid/mri/aseg 17 lh.hippocampus = Bugs = none = See Also = [[mri_pretess]] = Links = FreeSurfer = Methods Description = {{{ ?? }}} |
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| ## For example: ["Belliveau1991"] NameYear |
?? |
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| = Methods Description = {{{ description description }}} = Category = ## For example: CategoryFreeSurferCommandVolumeConversion Category``Stream``Function |
= Author/s = BruceFischl |
Index
Contents
Name
mri_tessellate - creates surface by tessellating given input volume
Synopsis
mri_tessellate [options] <invol> <labelvalue> <outsurf>
Arguments
Positional Arguments
<invol> |
input volume |
<labelvalue> |
integer, if input is filled volume, 127 is rh, 255 is lh |
<outsurf> |
binary surface of the tessellation |
Required Flagged Arguments
none
Optional Flagged Arguments
-a |
tessellate the surface of all voxels with different labels |
-n |
save surface with real RAS coordinates where c_(r,a,s) != 0 |
Outputs
<outsurf> |
surface file, typically ?h.orig |
Description
Note: the meaning of the labels can be found in $FREESURFER_HOME/FreeSurferColorLUT.txt
Examples
Example 1
mri_tessellate $SUBJECTS_DIR/subjid/mri/filled 127 rh.orig
Example 2
mri_tessellate $SUBJECTS_DIR/subjid/mri/aseg 17 lh.hippocampus
Bugs
none
See Also
Links
Methods Description
??
References
??
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>