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-map mapname : <sig>, minsig, iminsig, t -offset n : 0-based image offset -hemi hemisphere : <lh rh> -space spacename : space from which to surf (<native>, tal, sph) -spacedir spacedir : get data from spacedir -subject subjectname : name of subject on which to paint (with group) -surf surfacename : name of surface upon which to visualize -fthresh fthreshvalue : color map threshold (2.0) -fmid fmidvalue : middle of the color map (5.0) -fslope fslopevalue : slope of the color scale (0.1) -smoothsteps nsteps : spatial smoothing (2) -retinotopy map : eccen, polar, fieldsign -flat : display on flattened cortex (hemi.patch or hemi.occip.patch.flat for retinotopy) -patch patchname : display on flattened hemi.patchname -old : use old version of tksurfer |
|| -map <mapname> || <sig>, minsig, iminsig, t|| || -offset <n> || 0-based image offset|| || -hemi <hemisphere> || <lh rh>|| || -space <spacename> || space from which to surf (<native>, tal, sph)|| || -spacedir <spacedir> || get data from spacedir|| || -subject <subjectname> || name of subject on which to paint (with group)|| || -surf <surfacename> ||name of surface upon which to visualize|| || -fthresh <fthreshvalue> ||color map threshold (2.0)|| || -fmid <fmidvalue> ||middle of the color map (5.0)|| || -fslope <fslopevalue> ||slope of the color scale (0.1)|| || -smoothsteps <nsteps> ||spatial smoothing (2)|| || -retinotopy <map> ||eccen, polar, fieldsign|| || -flat ||display on flattened cortex (hemi.patch or hemi.occip.patch.flat for retinotopy)|| || -patch <patchname> ||display on flattened hemi.patchname|| || -old ||use old version of tksurfer|| |
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-umask umask : set unix file permission mask -version : print version and exit |
|| -umask <umask> || set unix file permission mask|| || -version || print version and exit|| |
Index TableOfContents
Name
surf-sess - ??
Synopsis
surf-sess -analysis <analysisname> -contrast <contrsatname> [options]
Arguments
Required Flagged Arguments
General
-analysis <analysisname> |
session-level functional analysis name |
-contrast <contrastname> |
contrast name |
Session
-sf <sessidfile> |
-df <srchdirfile> |
-s <sessid> |
-d <srchdir> |
Optional Flagged Arguments
General
-map <mapname> |
<sig>, minsig, iminsig, t |
-offset <n> |
0-based image offset |
-hemi <hemisphere> |
<lh rh> |
-space <spacename> |
space from which to surf (<native>, tal, sph) |
-spacedir <spacedir> |
get data from spacedir |
-subject <subjectname> |
name of subject on which to paint (with group) |
-surf <surfacename> |
name of surface upon which to visualize |
-fthresh <fthreshvalue> |
color map threshold (2.0) |
-fmid <fmidvalue> |
middle of the color map (5.0) |
-fslope <fslopevalue> |
slope of the color scale (0.1) |
-smoothsteps <nsteps> |
spatial smoothing (2) |
-retinotopy <map> |
eccen, polar, fieldsign |
-flat |
display on flattened cortex (hemi.patch or hemi.occip.patch.flat for retinotopy) |
-patch <patchname> |
display on flattened hemi.patchname |
-old |
use old version of tksurfer |
Session
-umask <umask> |
set unix file permission mask |
-version |
print version and exit |
Ouputs
??
Description
??
Examples
Example 1
??
Example 2
??
Bugs
??
See Also
??
Links
Methods Description
??
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>