Index
Contents
Name
tkmedit-sess - viewing functional results on the anatomical volume
Synopsis
tkmedit-sess -volid FSVolId -analysis <analysisname> [OPTIONS]
Arguments
Positional Arguments
None
Required Flagged Arguments
-volid FSVolId |
name of volume under subject/mri |
-analysis analysisname |
name of session-level functional analysis |
Optional Flagged Arguments
-s |
sessid (only one allowed) |
-isxavg |
method (fixed or random) |
-contrast contrastname |
contrast name |
-map |
mapname <sig>, minsig, iminsig, t |
-mapanalysis analysisname |
name of session-level functional analysis |
-mapsess |
sessid from which to get the map |
-mapisxavg |
method |
-space spacename |
native or tal |
-d |
sessdir ... |
-sessanat |
use session 3d anatomical instead of recon |
-fsd dir |
functional subdirectory (bold) |
-asd dir |
anatomical subdirectory (3danat) |
-seg segvol segcolor |
segment vol and color |
-aseg |
show automatic segmentation (must already exist) |
-segopacity opacity |
between 0 and 1 (def .3) |
-scriptonly |
don't run, just generate a script |
-umask umask |
set unix file permission mask |
-version |
print version and exit |
-fthresh thresh |
minimum threshold for display (2) |
-fsat thresh |
saturation threshold for display |
-static |
use statically linked version |
Outputs
<??> ???
Description
This command is used to view functional results on an anatomical volume. TkMedit is started by one of three methods: launching it from FreeSurfer with the EditVol button, using the tkmedit-sess script, and calling it from the command line.
Examples
Example 1
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Bugs
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See Also
Links
Methods Description
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References
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>