Diff for "FsTutorial/BrazilMarch2015CourseSchedule"

Differences between revisions 15 and 16

FreeSurfer Course, March 9-11, 2015

8:00 - 9:00am Registration Desk Open

Monday, March 9th - Introduction / Single Subject Analysis /Troubleshooting

Time	Title	Type	Lecturer
9:00 - 9:30	optional - Unix Tutorial for FreeSurfer Users	talk/tutorial	Ani
9:30 - 9:45	optional - Intro to FreeSurfer Jargon	talk	Ani
9:45 - 10:15	Introduction to Freesurfer	talk	AY
10:15 - 10:45	break
10:45 - 11:15	Analyzing the Individual Subject	talk	Lee
11:15 - 11:30	Freeview demonstration	demo	Lee
11:30 - 12:00	Surface-based Analysis: Intersubject Smoothing & Registration	talk	Iman

Tuesday, March 10th - Group Analysis / ROI Analysis / Longitudinal

Time	Title	Type	Lecturer
9:00 - 10:00	Interaction with Individual Subject Data Tutorial	tutorial	staff
10:00 - 10:45	FreeSurfer Troubleshooting	talk	Ani
10:45 - 11:15	break
11:15 - 12:15	Troubleshooting Tutorial	tutorial	staff
12:15 - 1:15	Lunch	--	--
1:15 - 2:15	Quality Checking a Recon	demo	Ani
2:15 - 2:55	Group Analysis	talk	Anastasia Yendiki
2:55 - 3:15	break
3:15 - 3:55	Group Analysis Tutorial	tutorial	staff
3:55 - 4:35	Multiple Comparisons	talk	Anastasia Yendiki
4:35 - 5:00	Multiple Comparisons Tutorial	tutorial	staff

Wednesday, March 11th - Multimodal / Diffusion / Q&A

Time	Title	Type	Lecturer
9:00 - 9:30	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Iman
9:30 - 10:00	ROI Analysis	talk	Lee
10:00 - 10:30	ROI Analysis Tutorial	tutorial	staff
10:30 - 11:00	break
11:00 - 11:30	Registration Methods	talk	Iman

|11:30 - 12:10 ||Introduction to Diffusion MRI ||talk ||Anastasia Yendiki ||

12:10 - 1:10	Lunch	--	--
1:10 - 2:10	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
2:10 - 3:00	Tracula Tutorial	tutorial	staff
3:00 - 3:30	break
3:30 - 4:30	Multi-Modal Integration	talk	Iman
4:30 - 5:00	Multi-Modal Integration Tutorial	tutorial	staff

FsTutorial/BrazilMarch2015CourseSchedule (last edited 2015-04-29 14:16:07 by LeeTirrell)

-Deletions are marked like this.
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-||10:45 - 11:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Lee ||

||11:45 - 12:00 ||Freeview demonstration ||[[FsTutorial/FreeviewDemo|demo]] ||Lee ||

||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||

||1:00 - 2:00 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||

||2:00 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Ani ||

||2:45 - 3:15 ||'''break''' || || ||

||3:15 - 4:15 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||

||4:15 - 5:15 ||Quality Checking a Recon ||demo ||Ani ||
+||10:45 - 11:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Lee ||

||11:15 - 11:30 ||Freeview demonstration ||[[FsTutorial/FreeviewDemo|demo]] ||Lee ||

||11:30 - 12:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk ||Iman ||
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-||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk ||Iman ||

||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis]] ||talk ||Anastasia Yendiki ||

||10:20 - 10:50 ||'''break''' || ||

||10:50 - 11:30 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||

||11:30 - 12:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Anastasia Yendiki ||

||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||

||1:00 - 1:30 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||

||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Lee ||

||2:00 - 3:00 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||

||2:00 - 3:30 ||'''break''' || ||

||3:30 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Iman ||

||4:00 - 4:45 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
+||9:00 - 10:00 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||

||10:00 - 10:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Ani ||

||10:45 - 11:15 ||'''break''' || || ||

||11:15 - 12:15 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||

||12:15 - 1:15 ||'''Lunch''' ||-- ||-- ||

||1:15 - 2:15 ||Quality Checking a Recon ||demo ||Ani ||

||2:15 - 2:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis]] ||talk ||Anastasia Yendiki ||

||2:55 - 3:15 ||'''break''' || ||

||3:15 - 3:55 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||

||3:55 - 4:35 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Anastasia Yendiki ||

||4:35 - 5:00 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||
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-||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.dti.ppt|Multi-Modal Integration]] ||talk ||Iman ||

||10:00 - 10:30 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
+||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Iman ||

||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Lee ||

||10:00 - 10:30 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
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+Line 38:
-||11:00 - 11:30 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||

||11:30 - 12:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki ||
+||11:00 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.pptx|Registration Methods]] ||talk ||Iman ||

|11:30 - 12:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki ||
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+Line 41:
-||1:10 - 1:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.pptx|Registration Methods]] ||talk ||Iman ||

||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki ||

||2:40 - 3:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
+||1:10 - 2:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki ||

||2:10 - 3:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
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-||3:30 - 4:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||

||4:00 - 4:20 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||
+||3:30 - 4:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.dti.ppt|Multi-Modal Integration]] ||talk ||Iman ||

||4:30 - 5:00 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||