Diff for "FsTutorial/BrazilMarch2015CourseSchedule"

Differences between revisions 5 and 6

FreeSurfer Course, March 9-10, 2014

8:00 - 9:00am Registration Desk Open

Monday, March 9th - Introduction / Single Subject Analysis /Troubleshooting

Time	Title	Type	Lecturer
9:00 - 9:30	optional - Unix Tutorial for FreeSurfer Users	tutorial	Ani
9:30 - 9:45	optional - Intro to FreeSurfer Jargon	talk	Ani
9:45 - 10:15	Introduction to Freesurfer	talk	AY
10:15 - 10:45	break
10:45 - 11:45	Analyzing the Individual Subject	talk	Lee

||11:45 - 12:00 ||Freeview demonstration ||demo ||Lee

12:00 - 1:00	Lunch (Suggestions for where to eat)	--	--
1:00 - 2:00	Interaction with Individual Subject Data Tutorial	tutorial	staff
2:00 - 2:45	FreeSurfer Troubleshooting	talk	Ani
2:45 - 3:15	break
3:15 - 4:15	Troubleshooting Tutorial	tutorial	staff
4:15 - 5:15	Quality Checking a Recon	demo	Ani

Tuesday, March 10th - Group Analysis / ROI Analysis / Longitudinal

Time	Title	Type	Lecturer
9:00 - 9:40	Surface-based Analysis: Intersubject Smoothing & Registration	talk	Iman
9:40 - 10:20	Group Analysis	talk	Anastasia Yendiki
10:20 - 10:50	break
10:50 - 11:30	Group Analysis Tutorial	tutorial	staff
11:30 - 12:00	Multiple Comparisons	talk	Anastasia Yendiki
12:00 - 1:00	Lunch	--	--
1:00 - 1:30	Multiple Comparisons Tutorial	tutorial	staff
1:30 - 2:00	ROI Analysis	talk	Lee
2:00 - 3:00	ROI Analysis Tutorial	tutorial	staff
2:00 - 3:30	break
3:30 - 4:00	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Iman
4:00 - 4:45	Longitudinal Tutorial	tutorial	staff

Wednesday, March 11th - Multimodal / Diffusion / Q&A

Time	Title	Type	Lecturer
9:00 - 10:00	Multi-Modal Integration	talk	Iman
10:00 - 10:30	Multi-Modal Integration Tutorial	tutorial	staff
10:30 - 11:00	break
11:00 - 11:30	Multi-Modal Integration Tutorial	tutorial	staff
11:30 - 12:10	Introduction to Diffusion MRI	talk	Anastasia Yendiki
12:10 - 1:10	Lunch	--	--
1:10 - 1:40	optional technical talk - Registration Methods	talk	Iman
1:40 - 2:40	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
2:40 - 3:00	Tracula Tutorial	tutorial	staff
3:00 - 3:30	break & Evaluation
3:30 - 4:00	Tracula Tutorial	tutorial	staff
4:00 - 4:20	Question and Answer Session (Answers to online questions here), FsQuiz	talk	staff

FsTutorial/BrazilMarch2015CourseSchedule (last edited 2015-04-29 14:16:07 by LeeTirrell)

-Deletions are marked like this.
+Additions are marked like this.
 Line 2:
-'''!FreeSurfer Course, May 5-7, 2014'''
+'''!FreeSurfer Course, March 9-10, 2014'''
 Line 4:
-=== 8:00 - 9:30am Registration Desk Open ===

==== Monday, May 5th - Introduction / Single Subject Analysis /Troubleshooting ====
+=== 8:00 - 9:00am Registration Desk Open ===

==== Monday, March 9th - Introduction / Single Subject Analysis /Troubleshooting ====
 Line 7:
-||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial ||Ani ||

||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Ani||

||9:15 - 9:30 ||'''break''' || || ||

||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||AY ||

||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Lee ||

||11:10 - 11:30 ||'''break''' || || ||

||11:30 - 12:10 ||'' '' || || ||

||12:10 - 1:10 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|(Suggestions for where to eat)]] ||-- ||-- ||

||1:10 - 1:30 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Lee ||

||1:30 - 2:30 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||

||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Ani ||

||3:00 - 3:20 ||'''break''' || || ||

||4:00 - 5:00 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||

||5:00 - 5:15 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||
+||9:00 - 9:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial ||Ani ||

||9:30 - 9:45 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Ani||

||9:45 - 10:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||AY ||

||10:15 - 10:45 ||'''break''' || || ||

||10:45 - 11:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Lee ||

||11:45 - 12:00 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Lee 

||12:00 - 1:00 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|(Suggestions for where to eat)]] ||-- ||-- ||

||1:00 - 2:00 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||

||2:00 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Ani ||

||2:45 - 3:15 ||'''break''' || || ||

||3:15 - 4:15 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||

||4:15 - 5:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||Ani ||
-Line 23:
+Line 21:
-==== Tuesday, May 6th - Group Analysis / ROI Analysis / Longitudinal ====
+==== Tuesday, March 10th - Group Analysis / ROI Analysis / Longitudinal ====
-Line 25:
+Line 23:
-|| || || || ||

||3:20 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||Ani ||
-Line 29:
+Line 25:
-||10:20 - 10:40 ||'''break''' || ||

||10:40 - 11:20 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||

||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk ||Anastasia Yendiki ||
+||10:20 - 10:50 ||'''break''' || ||

||10:50 - 11:30 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||

||11:30 - 12:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk ||Anastasia Yendiki ||
-Line 33:
+Line 29:
-||1:00 - 1:20 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||

||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk ||Lee ||

||2:30 - 2:50 ||'''break''' || ||

||2:50 - 3:20 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||

|| || || || ||

||6:05 - 6:20 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||
+||1:00 - 1:30 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||

||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk ||Lee ||

||2:00 - 3:00 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||

||2:00 - 3:30 ||'''break''' || ||

||3:30 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Iman ||

||4:00 - 4:45 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
-Line 41:
+Line 37:
-==== Wednesday, May 7th - fMRI / Multimodal /  Future Directions / Q&A ====

##[[https://docs.google.com/spreadsheet/viewform?formkey=dGZKM24xb1NpRDRJOHhwdmxCUm9CbFE6MA |The Course Evaluation has been posted. ]] Please feel free to start filling it out!
+==== Wednesday, March 11th - Multimodal /  Diffusion / Q&A ====
-Line 44:
+Line 39:
-||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Iman ||

||3:50 - 4:30 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||

||4:30 - 5:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki ||

||8:00 - 8:30 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] ||talk ||Iman ||

||11:40 - 12:40 ||'''Lunch''' ||-- ||-- ||

||12:40 - 1:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.multimodal-integration.ppt|Multi-Modal Integration]] ||talk ||Iman ||

||1:40 - 2:55 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||

||2:55 - 3:15 ||'''break''' & Evaluation || ||

||3:15 - 4:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki ||

||4:05 - 4:50 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||

|| || || || ||

||5:20 - 5:50 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||





##'''The !FreeSurfer Evaluation is [[ https://docs.google.com/spreadsheet/viewform?formkey=dGZKM24xb1NpRDRJOHhwdmxCUm9CbFE6MA|here]]!'''
+||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.multimodal-integration.ppt|Multi-Modal Integration]] ||talk ||Iman ||

||10:00 - 10:30 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||

||10:30 - 11:00 ||'''break''' || ||

||11:00 - 11:30 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||

||11:30 - 12:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki ||

||12:10 - 1:10 ||'''Lunch''' ||-- ||-- ||

||1:10 - 1:40 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] ||talk ||Iman ||

||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki ||

||2:40 - 3:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||

||3:00 - 3:30 ||'''break''' & Evaluation || ||

||3:30 - 4:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||

||4:00 - 4:20 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||