Deletions are marked like this. | Additions are marked like this. |
Line 49: | Line 49: |
Alternatively: ||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk ||Mert Sabuncu || ||10:00 - 10:30 ||QDEC demonstration ||demo ||Nick Schmansky || ||10:30 - 10:50 ||'''break''' || || || ||10:50 - 11:50 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff || ||10:50 - 11:50 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff || ||11:50 - 12:50 ||'''Lunch''' ||-- ||-- || ||''12:15 - 12:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' || ||12:50 - 1:20 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] ||talk ||Bruce Fischl || ||1:20 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve || ||2:20 - 2:50 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff || ||2:50 - 3:10 ||'''break''' || || || ||3:10 - 3:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter || ||3:40 - 4:30 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff || ||4:30 - 5:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve || ||5:30 - 6:15 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff || |
|
Line 68: | Line 51: |
||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fmri.april2011.pdf|Basics of fMRI Analysis|&do=get]] ||talk ||Doug Greve || ||10:00 - 10:20 ||'''break''' || || || ||10:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve || ||11:40 - 12:40 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff || ||12:40 - 1:40 ||'''Lunch''' ||-- ||-- || ||''1:10 - 1:40'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/motion_correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' || ||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki || ||2:40 - 3:25 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff || ||3:25 - 3:45 ||'''break''' & [[https://spreadsheets.google.com/viewform?formkey=dGlVV3Bzb296bnBWN3lBc3l5U3lPUGc6MA|Evaluation]] || || || ||3:45 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki || ||4:15 - 5:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || ||5:00 - 5:30 ||Question and Answer Session, FsQuiz ||talk ||staff || |
||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fmri.april2011.pdf|Basics of fMRI Analysis|&do=get]] ||talk ||Doug Greve || '''Alternative''': Advice on Processed Data || one-on-one || staff|| ||10:00 - 10:20 ||'''break''' || || || || || || ||10:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve || '''Alternative''': Advice on Processed Data || one-on-one || staff|| ||11:40 - 12:40 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff || || || || ||12:40 - 1:40 ||'''Lunch''' ||-- ||-- || || || || ||''1:10 - 1:40'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/motion_correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' || || || || ||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki || '''Alternative''': Advice on Processed Data || one-on-one || staff|| ||2:40 - 3:25 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff || || || || ||3:25 - 3:45 ||'''break''' & [[https://spreadsheets.google.com/viewform?formkey=dGlVV3Bzb296bnBWN3lBc3l5U3lPUGc6MA|Evaluation]] || || || || || || ||3:45 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki || '''Alternative''': Advice on Processed Data || one-on-one || staff|| ||4:15 - 5:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || || || || ||5:00 - 5:30 ||Question and Answer Session, FsQuiz ||talk ||staff || || || || |
FreeSurfer Course, December 12-14, 2011
MGH, Charlestown Navy Yard, Building 149, Conference Room A
Monday, December 12th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting
Time |
Title |
Type |
Lecturer |
8:00 - 8:30 |
optional - Unix Tutorial for FreeSurfer Users online practice |
tutorial |
Allison Stevens |
8:30 - 9:00 |
optional - Intro to FreeSurfer Jargon |
talk |
Allison Stevens |
8:30 - 9:00 |
Course Registration |
sign-in |
|
9:00 - 9:30 |
talk |
Bruce Fischl |
|
9:30 - 10:30 |
talk |
Doug Greve |
|
10:30 - 10:50 |
break |
|
|
10:50 - 11:20 |
Tkmedit/Tksurfer demonstration |
demo |
Doug Greve |
11:20 - 11:50 |
tutorial |
staff |
|
11:50 - 12:30 |
talk |
Doug Greve |
|
12:30 - 1:30 |
Lunch (Suggestions) |
-- |
-- |
1:00 - 1:30 |
Optional Lunch Talk- A Non-physicist's Intro to MR SpinBench |
talk |
Dylan Tisdall |
1:30 - 2:15 |
talk |
Lilla Zollei |
|
2:15- 2:55 |
talk |
Bruce Fischl |
|
2:55 - 3:15 |
break |
|
|
3:15 - 3:35 |
Troubleshooting Demonstration |
demo |
Allison |
3:35 - 4:35 |
tutorial |
staff |
|
4:35 - 5:30 |
Quality Checking a Recon |
demo |
Allison Stevens |
5:30 - |
optional - FreeSurfer Installation on Personal Laptops |
one-on-one |
staff |
5:30 - |
optional - Start Processing Your Own Data |
one-on-one |
staff |
Boston Beer Works location information here and here.
Meet us at 6:40pm at the front of Building 149 (the entrance on the opposite side of the building from where the Course is held).
If you miss us, we are taking the 6:45pm MGH/Navy Yard shuttle to North Station (the next one departs at 6:45pm). From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.
Tuesday, December 13th - Group Analysis/ ROIs / Registration / Diffusion
Time |
Title |
Type |
Lecturer |
9:00 - 10:00 |
talk |
Doug Greve |
|
10:00 - 10:30 |
tutorial |
staff |
|
10:30 - 10:50 |
break |
|
|
10:50 - 11:20 |
talk |
Martin Reuter |
|
11:20 - 12:10 |
tutorial |
staff |
|
12:10 - 1:10 |
Lunch |
-- |
-- |
12:40 - 1:10 |
Optional Lunch Talk- MRI Acquisition Methods for Morphometry |
talk |
Andre van der Kouwe |
1:10 - 1:40 |
Future Directions: Inferring architectonic boundaries from in-vivo MRI |
talk |
Bruce Fischl |
1:40 - 2:40 |
talk |
Doug Greve |
|
2:40 - 3:00 |
break |
|
|
3:00 - 3:45 |
tutorial |
staff |
|
3:45 - 4:45 |
talk |
Mert Sabuncu |
|
4:45 - 5:15 |
QDEC demonstration |
demo |
Nick Schmansky |
5:15 - 6:15 |
tutorial |
staff |
|
5:15 - 6:15 |
tutorial |
staff |
Wednesday, December 14th - Multi-Modal / Future Directions / fMRI / Q&A
9:00 - 10:00 |
talk |
Doug Greve |
Alternative: Advice on Processed Data |
one-on-one |
staff |
|
10:00 - 10:20 |
break |
|
|
|
|
|
10:20 - 11:40 |
talk |
Doug Greve |
Alternative: Advice on Processed Data |
one-on-one |
staff |
|
11:40 - 12:40 |
tutorial |
staff |
|
|
|
|
12:40 - 1:40 |
Lunch |
-- |
-- |
|
|
|
1:10 - 1:40 |
Optional Lunch Talk- Motion-compensated neuroanatomical imaging |
talk |
Dylan Tisdall |
|
|
|
1:40 - 2:40 |
talk |
Anastasia Yendiki |
Alternative: Advice on Processed Data |
one-on-one |
staff |
|
2:40 - 3:25 |
tutorial |
staff |
|
|
|
|
3:25 - 3:45 |
break & Evaluation |
|
|
|
|
|
3:45 - 4:15 |
talk |
Anastasia Yendiki |
Alternative: Advice on Processed Data |
one-on-one |
staff |
|
4:15 - 5:00 |
tutorial |
staff |
|
|
|
|
5:00 - 5:30 |
Question and Answer Session, FsQuiz |
talk |
staff |
|
|
|