Diff for "FsTutorial/May2013CourseSchedule"

Differences between revisions 7 and 8

FreeSurfer Course, April 29 - May 1, 2013
MGH, Charlestown Navy Yard, Building 114, Room D1

Monday, April 29th - Introduction / Single Subject / Registration / Troubleshooting

Time	Title	Type	Lecturer	Give us your feedback
8:00 - 8:30	optional - Unix Tutorial for FreeSurfer Users online practice	tutorial	Maritza Ebling
8:30 - 9:00	optional - Intro to FreeSurfer Jargon	talk	Melanie Ganz
8:30 - 9:00	Course Registration	sign-in	staff
9:00 - 9:30	Introduction to Freesurfer	talk	Bruce Fischl
9:30 - 10:30	Analyzing the Individual Subject	talk	Bruce Fischl
10:30 - 10:50	break
10:50 - 11:10	Freeview/Tksurfer demonstration	demo	Doug Greve
11:10 - 11:40	Interaction with Individual Subject Data Tutorial	tutorial	staff
11:40 - 12:20	Surface-based Analysis: Intersubject Smoothing & Registration	talk	Doug Greve
12:20 - 1:20	Lunch (Suggestions for where to eat)	--	--
12:35 - 1:20	Optional Lunch Talk- A Non-physicist's Intro to MR SpinBench	talk	Dylan Tisdall
1:20 - 2:00	Failure Modes	talk	Bruce Fischl
2:00 - 2:20	Troubleshooting Demonstration	demo	Allison Stevens
2:20 - 2:40	break
2:40 - 3:40	Troubleshooting Tutorial	tutorial	staff
3:40 - 4:40	Quality Checking a Recon	demo	Allison Stevens

Tuesday, April 30th - ROIs / Longitudinal / Multimodal / Group Analysis

Time	Title	Type	Lecturer	Give us your feedback
9:00 - 9:40	ROI Analysis	talk	Doug Greve
9:40 - 10:10	ROI Analysis Tutorial	tutorial	staff
10:10 - 10:30	break
10:30 - 11:30	Group Analysis / GLM / Multiple Comparisons	talk	Melanie Ganz
11:30 - 11:50	QDEC demonstration	demo	Nick Schmansky
11:50 - 12:50	Lunch	--	--
12:20 - 12:50	Optional Lunch Talk- MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
12:50 - 1:50	Group Analysis / Multiple Comparisons - mri_glmfit Tutorial	tutorial	staff
12:50 - 1:50	Group Analysis - qdec Tutorial	tutorial	staff
1:50 - 2:20	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
2:20 - 2:40	break
2:40 - 3:40	Freeview Demo, Longitudinal Tutorial	tutorial	staff
3:40 - 4:40	Multi-Modal Integration	talk	Doug Greve
4:40 - 5:00	Registration Methods	talk	Lilla Zollei
5:00 - 5:45	Multi-Modal Integration Tutorial	tutorial	staff

Boston Beer Works location information here and here.
Meet us at 6:10pm at the front of Building 149 (map to be provided soon).
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Wednesday, May 1st - fMRI / Diffusion / Q&A

Time	Title	Type	Lecturer	Give us your feedback
9:00 - 10:00	Basics of fMRI Analysis	talk	Jon Polimeni
10:00 - 10:40	FSFAST	talk	Doug Greve
10:40 - 11:00	break
11:00 - 11:40	FSFAST continued	talk	Doug Greve
11:40 - 12:40	FSFAST Tutorial	tutorial	staff
12:40 - 1:40	Lunch	--	--
1:10 - 1:40	Optional Lunch Talk- Motion-compensated neuroanatomical imaging	talk	Dylan Tisdall
1:40 - 2:20	Introduction to Diffusion MRI	talk	Anastasia Yendiki
2:20 - 2:50	Diffusion Processing Tutorial	tutorial	staff
2:50 - 3:10	break & Evaluation
3:10 - 3:40	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
3:40 - 4:25	Tracula Tutorial	tutorial	staff
4:25 - 5:00	Future Directions	talk	Bruce Fischl
5:00 - 5:30	Question and Answer Session, FsQuiz	talk	staff

FsTutorial/May2013CourseSchedule (last edited 2013-05-01 14:59:58 by LouisVinke)

-Deletions are marked like this.
+Additions are marked like this.
 Line 12:
-||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk ||Allison Stevens ||          ||
+||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk || Melanie Ganz ||          ||
 Line 17:
-||10:50 - 11:20 ||Tkmedit/Tksurfer demonstration ||demo ||Doug Greve ||       ||

||11:20 - 11:50 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||         ||

||11:50 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve ||     ||

||12:30 - 1:30 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|  (Suggestions for where to eat)]]||-- ||-- ||

||''1:00 - 1:30'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Dec_12_2011_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' ||          ||

||1:30 - 2:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl ||          ||

||2:10 - 2:30 ||Troubleshooting Demonstration || demo || Allison Stevens ||         ||

||2:30 - 2:50 ||'''break''' || || || ||

||2:50 - 3:50 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||      ||

||3:50 - 4:50 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||Allison Stevens ||      ||

||5:00 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one || staff || ||

||5:00 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff ||      ||
+||10:50 - 11:10 ||Freeview/Tksurfer demonstration ||demo ||Doug Greve ||       ||

||11:10 - 11:40 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||         ||

||11:40 - 12:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve ||     ||

||12:20 - 1:20 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|  (Suggestions for where to eat)]]||-- ||-- ||

||''12:35 - 1:20'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Dec_12_2011_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' ||          ||

||1:20 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl ||          ||

||2:00 - 2:20 ||Troubleshooting Demonstration || demo || Allison Stevens ||         ||

||2:20 - 2:40 ||'''break''' || || || ||

||2:40 - 3:40 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||      ||

||3:40 - 4:40 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||Allison Stevens ||      ||

##||5:00 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one || staff || ||

##||5:00 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff ||      ||
 Line 36:
-||10:30 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || J. Eugenio Iglesias ||          ||
+||10:30 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || Melanie Ganz ||          ||