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FreeSurfer Release Notes

These Release Notes cover what's new in a release, and known issues.

See also DownloadAndInstall, and BugReporting.

Stable v5.3.0

15 May 2013

Stable release version 5.3.0 is a bug fix release to correct the problem with pial and white surface creation affecting thickness and area measures.

What's New

Known Issues

sudo apt-get install libjpeg62-dev

find this line:

< for t=1:step:size(perim,2)

and change to:

> si=max(size(perim));
> for t=1:step:si

in recon-all line 6148 change:

  if ( ! $found_tpNid  ) then

to

  if ( ! $found_tpNid  && ! $DoAddTp ) then

Upcoming Features (v6.0)


Stable v5.2.0

2 March 2013

Stable release version 5.2.0 contains new features and bug fixes.

What's New

Known Issues

Upcoming Features (release v5.3 or v6.0)


Stable v5.1.0

24 May 2011

Stable release version 5.1.0 contains new features and bug fixes, and is covered under new license agreements.

What's New

Known Issues

# find these lines:
set cmd = (mri_ca_normalize)
if($UseControlPoints)  set cmd = ($cmd -f $ControlPointsFile)

# and comment-out the second line like this:
set cmd = (mri_ca_normalize)
#if($UseControlPoints)  set cmd = ($cmd -f $ControlPointsFile)

# then re-run your subjects with the flags: -autorecon2 -autorecon3 -clean-aseg

cd subjid/mri
talairach_avi --i nu.mgz --xfm transforms/talairach.xfm
recon-all -s subjid -segstats

in recon-all line 5407 change:

  if ($status) then

to

  if ( $status && ! $DoAddTp ) then


Stable v5.0.0

16 Aug 2010

Stable release version 5.0.0 is a major release containing new features and bug fixes.

What's New

Known Issues


Stable v4.5.0

11 Aug 2009

Stable release version 4.5.0 is a minor release containing bug fixes and new features affecting both the default (cross-sectional) and longitudinal analysis streams.

What's New

Known Issues


Stable v4.4.0

11 June 2009

Stable release version 4.4.0 is a minor release containing bug fixes affecting the longitudinal analysis stream.

What's New

Known Issues


Stable v4.3.1

19 May 2009

Stable release version 4.3.1 is a minor release containing bug fixes (but the changes do not change the results in the default analysis stream relative to v4.3.0), and new features.

What's New

Known Issues


Stable v4.3.0

26 March 2009

Stable release version 4.3.0 is a minor release containing bug fixes (that change some results in the default analysis stream) and new features.

What's New

Known Issues


Stable v4.2.0

21 Jan 2009

Stable release version 4.2.0 is a minor release containing bug fixes (that change some results in the default analysis stream) and new features.

What's New

Known issues

Upcoming features


Stable v4.1.0

14 Oct 2008

Stable release version 4.1.0 is a minor release containing bug fixes (that change some results in the default analysis stream) and new features.

What's New

Known issues


Stable v4.0.5

15 June 2008

Stable release version 4.0.5 is a new feature and bug fix release.

What's New

Known issues


Stable v4.0.4

6 May 2008

Stable release version 4.0.4 is a bug fix release.

What's New

Known issues

Section "Extensions"
   Option "Composite" "false"
EndSection


Stable v4.0.3

31 March 2008

Stable release version 4.0.3 is a bug fix and new feature release.

What's New

Known issues

Section "Extensions"
   Option "Composite" "false"
EndSection


Stable v4.0.2

16 December 2007

Stable release version 4.0.2 is a bug fix and new feature release.

What's New

Known issues


Stable v4.0.1

18 September 2007

Stable release version 4.0.1 is a bug fix release.

What's New

Known issues


Stable v4.0.0

21 August 2007

Stable release version 4.0.0 is a major release with new features and bug fixes.

What's New

Known issues


Stable v3.0.5

7 Feb 2007

Stable release version 3.0.5 is a bug-fix release.

What's New

Known Issues


Stable v3.0.4

25 Nov 2006

Stable release version 3.0.4 is a bug-fix release.

What's New

Known Issues


Stable v3.0.3

24 May 2006

Stable release version 3.0.3 is a bug-fix and feature-addition release.

What's New

Known Issues

cd youraveragesubject/surf
cp lh.sphere.reg lh.sphere.reg.old # backup
cp rh.sphere.reg lh.sphere.reg # copy rh.sphere to lh.sphere


Stable v3.0.2

18 April 2006

Stable release version 3.0.2 is a bug-fix and feature-addition release.

What's New

Known Issues


Stable v3.0.1

13 March 2006

Stable release version 3.0.1 is a bug-fix release.

What's New

Known Issues


Stable v3.0.0

5 March 2006

Stable release version 3.0.0 is a major release containing many new features over the prior stable release (version 2.2).

Important! The recon-all script has been updated. Please read the ReconAllChanges page which describes these changes! Users of prior 'dev' releases should also take note of the changes.

What's New

Known Issues

ReleaseNotes (last edited 2014-10-07 17:51:36 by NickSchmansky)