Bug

Example

Fixed?

There's a difference between the orig surf and white surf after wm edits
--usually the orig surf is better

White surf does weird indentations even when wm voxels are present (white matter damage?)
--again orig surf is better here

Surfaces between temporal lobe and the cerebral cortex are usually crazy (random wm voxels)

Still some problems with calcarine area - aseg is correct yet the surfaces aren't

073_dev

Pial surf isn't correct at midline
(not incorrect but not pretty to look at)

073_dev

Sometimes the dura is taken as wm and white surf is pulled outward, after deleting the dura from wm.mgz, the white surf still doesn't adjust - the orig surf, however, does.

092 at 174 131 143, 097 at 117 147 153, 102 at 114 122 162

When I click on the snapshot button, I can save a snapshot as either tiff
or rgb. When I right or left click on the snapshot button I can only save rgb. If I
try to save a .tif in the rgb window, tkmedit crashes with this error:

*** glibc detected *** tkmedit.bin: free(): invalid next size (normal):
0x000000002370d610 ***
======= Backtrace: =========
/lib64/libc.so.6[0x354c27230f]
/lib64/libc.so.6(cfree+0x4b)[0x354c27276b]
/lib64/libc.so.6(fclose+0x14b)[0x354c260d5b]
tkmedit.bin(cos+0xa8b)[0x41542b]
tkmedit.bin(atan+0x2101)[0x4167c1]

Watershed method to correct skull strip errors - there seems to be no in between for fine tuning the amount of brain I want present. There's either part of the brain missing (skull strip failure) or the entire skull is present.

Tried with buckner 145_wstest

Requests

Notes/Granted?

Quit prompt when pressing Ctrl-q when view window is highlighted in tkmedit.

Have a tool that can highlight and add wm voxels at the same time?