FreeSurfer

FreeSurfer is a software package for the analysis and visualization of structural and functional neuroimaging data from cross-sectional or longitudinal studies. It is developed by the Laboratory for Computational Neuroimaging at the Athinoula A. Martinos Center for Biomedical Imaging. FreeSurfer is the structural MRI analysis software of choice for the Human Connectome Project.

Our tools

Structural MRI

FreeSurfer provides a full processing stream for structural MRI data, including:

For more information, see:

Functional MRI

Diffusion MRI

* AnatomiCuts: An unsupervised hierarchical streamline clustering algorithm based on anatomical similarity. AnatomiCuts is currently in the developing branch. * DiffusionTool : This tool can help generating the configuration file of TRACULA and setting up the parameters to run AnatomiCuts.

PET Partial Volume Correction (PVC) and Kinetic Modeling

Multimodal

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