[wiki:FsTutorial top]
Exercise Overview
Below are links to the tutorial exercises, extracted from the tutorial's supporting text.
1.0 Morphometry and reconstruction
[wiki:FsTutorial/Conversion Exercise A: Convert a DICOM volume into mgz format]
[wiki:FsTutorial/Talairach Exercise B: Fixing bad output from the Talairach registration]
[wiki:FsTutorial/ControlPoints Exercise C: Using control points for intensity normalization]
[wiki:FsTutorial/SkullStripTutorial Exercise D: Fixing bad output from skull stripping]
[wiki:FsTutorial/ViewSegOutput Exercise E: View each of the volumes produced after the preprocessing steps with tkmedit]
[wiki:FsTutorial/FixingDefects Exercise F: Recognizing and fixing inaccuracies in the white matter surfaces]
[wiki:FsTutorial/PialEdits Exercise G: Correcting Pial Surfaces]
[wiki:FsTutorial/FinalSurfEx Exercise H: View the final surfaces with tkmedit and tksurfer]
2.0 Group analysis
[wiki:FsTutorial/CreateFsgdFile Exercise A. Create an FSGD file using the table above]
[wiki:FsTutorial/PerformEstimation Exercise B. Use mris_glm to perform the estimation]
[wiki:FsTutorial/CreateContrastVectors Exercise C. Specify contrast vectors to test hypotheses]
[wiki:FsTutorial/ComputeContrast Exercise D. Use mris_glm to compute the contrast]
3.0 Visualization and inspection of group analysis results
[wiki:FsTutorial/VisualizingAndPlotting Exercise A. Visualizing and plotting]
[wiki:FsTutorial/ComputingRoiStatistics Exercise B. Computing statistics inside an ROI]
4.0 Working with FSL Feat output and FreeSurfer
[wiki:FsTutorial/RegisterFeatOntoAnatomical Exercise A. Registering FSL Feat output to the anatomical]
[wiki:FsTutorial/OverlayFeatStatisticalMaps Exercise B. Overlaying FSL Feat statistical maps]
[wiki:FsTutorial/MapSegmentationsToFunctionalSpace Exercise C. Mapping automatic segmentations to the functional space]