Deletions are marked like this. | Additions are marked like this. |
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||<^>["tksurfer_labeledit"] ||'''Editing labels/annotations''' in tksurfer|| | ||<^>[[tksurfer_labeledit]] ||'''Editing labels/annotations''' in tksurfer|| |
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||<^>["tksurfer"] ||Freesurfer's surface-viewing application. (I completed the list of flagged arguments.)|| ||<^>["mris_curvature_stats"] ||Curvature-related statistics || ||<^>["mris_label2annot"] ||Combine label files plus colortable into an annotation file || ||<^>["mri_annotation2label"]||Extract label file from annotation file || ||<^>["mris_make_template"]||Use data from multiple subjects to create a surface registration template file || ||<^>["mri_make_template"]||Use data from multiple subjects to create a volume registration template || ||<^>["mris_register"]||For one subject, register to a registration template (usually resulting in ?h.sphere.reg) || ||<^>["mrisp_paint"]||"Paint" data from a template file "onto a given surface". Allows viewing data from a template file.|| |
||<^>[[tksurfer]] ||Freesurfer's surface-viewing application. (I completed the list of flagged arguments.)|| ||<^>[[mris_curvature_stats]] ||Curvature-related statistics || ||<^>[[mris_label2annot]] ||Combine label files plus colortable into an annotation file || ||<^>[[mri_annotation2label]]||Extract label file from annotation file || ||<^>[[mris_make_template]]||Use data from multiple subjects to create a surface registration template file || ||<^>[[mri_make_template]]||Use data from multiple subjects to create a volume registration template || ||<^>[[mris_register]]||For one subject, register to a registration template (usually resulting in ?h.sphere.reg) || ||<^>[[mrisp_paint]]||"Paint" data from a template file "onto a given surface". Allows viewing data from a template file.|| |
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||<^>["gwcode_tksurfer_delink"]||Code relating to -delink|| ||<^>["gwcode_tksurfer_labelresize"]||Code to allow the tool window's per-vertex data fields to expand on window resize|| |
||<^>[[gwcode_tksurfer_delink]]||Code relating to -delink|| ||<^>[[gwcode_tksurfer_labelresize]]||Code to allow the tool window's per-vertex data fields to expand on window resize|| |
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||<^>["gwissue_labeledit"]||Issues regarding the tksurfer functionality relating to creating and editing labels and annotations|| | ||<^>[[gwissue_labeledit]]||Issues regarding the tksurfer functionality relating to creating and editing labels and annotations|| |
GrahamWideman pages
Useful pages
Link |
Description |
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Concepts |
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Cross-reference table showing files read and written by each step in recon-all |
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Article on labels, colortables and annotations |
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Editing labels/annotations in tksurfer |
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Creating and using "tif" templates for spherical registration of surfaces |
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Creating and using GCA atlas files for parcellation |
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Discussion of the contents and format of the so-called "Image" file format used to store FreeSurfer surface-registration template data. |
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Scripts |
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Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA |
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Programs/Scripts (... for which I wrote some documentation) |
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Freesurfer's surface-viewing application. (I completed the list of flagged arguments.) |
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Curvature-related statistics |
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Combine label files plus colortable into an annotation file |
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Extract label file from annotation file |
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Use data from multiple subjects to create a surface registration template file |
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Use data from multiple subjects to create a volume registration template |
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For one subject, register to a registration template (usually resulting in ?h.sphere.reg) |
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"Paint" data from a template file "onto a given surface". Allows viewing data from a template file. |
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Source code suggestions |
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Code relating to -delink |
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Code to allow the tool window's per-vertex data fields to expand on window resize |
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Issues |
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Issues regarding the tksurfer functionality relating to creating and editing labels and annotations |
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Wiki |
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Distilled instructions on how to insert an image on a wiki page |
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