Differences between revisions 103 and 112 (spanning 9 versions)
⇤ ← Revision 103 as of 2026-02-16 13:56:59 →
Size: 7213
Editor: DougGreve
Comment:
← Revision 112 as of 2026-06-05 16:05:01 → ⇥
Size: 6117
Editor: LiamrSennott
Comment:
Deletions are marked like this. Additions are marked like this.
Line 1: Line 1:
= Virtual FreeSurfer Course for Boston Veterans Administration Feb 17, 20206 =

This is a 4 hour shortened version of our 2 day course below.

== Schedule ==

 Tuesday, Feb 17 - Introduction / Single Subject Analysis / Group Analysis
||12:00 - 12:30 ||[[attachment:va2026.fs.intro.pptx|Introduction to Freesurfer]] ||talk ||Doug Greve ||
||12:30 - 1:30 ||[[attachment:va2026.fsrecon.pptx|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
|| 1:30 - 2:00 ||[[FsTutorial/FreeviewDemo|Freeview Demo]] ||demo ||Doug Greve ||
|| 2:00 - 2:30 ||[[FsTutorial/OutputData_freeview|Tutorial: Individual Subject Output]] ||tutorial ||Nate Draudt ||
|| 2:30 - 3:15 ||[[attachment:va2026.GLM.pptx|Group Analysis]] ||talk ||Doug Greve ||
|| 3:15 - 4:00 ||[[FsTutorial/GroupAnalysisV6.0|Tutorial: Group Analysis]] ([[FsgdExamples|FSGD Examples]]) ||tutorial ||Nate Draudt||
|| 4:00 - 4:30 ||Self-paced Practice ||tutorial ||staff ||
|| 4:30 - 5:00 ||Q&A ||tutorial ||staff ||

[[https://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription/Remote_Qualify|Setting up the VM.]] This is already done for the course.

<<BR>><<BR>><<BR>><<BR>><<BR>><<BR>>		 = Virtual Course =
https://surfer.nmr.mgh.harvard.edu/fswiki/VirtualCourse
Line 27: Line 10:
Line 30: Line 12:
Line 36: Line 19:
 * [[FsTutorial/PracticeV6.0| Practice Working with Data]]  * [[FsTutorial/PracticeV6.0|Practice Working with Data]]
Line 39: Line 22:
 * [[FsTutorial/MultipleComparisonsV6.0Perm|Multiple Comparisons via command-line (Permutation)]]
 ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/GLM.pptx|slides]])		  * [[FsTutorial/MultipleComparisonsV6.0Perm|Multiple Comparisons via command-line (Permutation)]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/GLM.pptx|slides]])
Line 53: Line 35:
 * [[FsTutorial/MultipleComparisonsV6.0|Multiple Comparisons via command-line]]
 ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/multiplecomparisons.ppt|slides]], [[https://www.youtube.com/watch?v=EJewud8obuo|video]])
* [[FsTutorial/MultipleComparisonsV6.0|Multiple Comparisons via command-line]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/multiplecomparisons.ppt|slides]], [[https://www.youtube.com/watch?v=EJewud8obuo|video]])
Line 58: Line 40:

Virtual Course

https://surfer.nmr.mgh.harvard.edu/fswiki/VirtualCourse

FreeSurfer Tutorials

The FreeSurfer tutorials provided below are designed to give users an introduction to using FreeSurfer, as well as get you acquainted with the concepts needed to perform its various modes of analysis and processing of MRI data. The tutorials are designed to be followed along in a terminal window, where commands can be copy/pasted into the terminal window instead of typed.

In order to run any of the FreeSurfer tutorials, you must have a valid FreeSurfer installation on your machine, and a local copy of the tutorial data. Be sure to set the TUTORIAL_DATA environment variable properly as specified on the tutorial data page.

version 7.0+

Basics:

version 6.0+

Basics:

Specialized topics:

Other:

version 5.1/5.3

Data for the 5.1/5.3 tutorials can be found on the bottom of the tutorial data page.

Basics:

Specialized topics:

Tutorials (last edited 2026-06-05 16:05:01 by LiamrSennott)